Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC246785.4-201ENST00000605374 287 ntBASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 AF250324.2-201ENST00000608299 610 ntBASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 AC126915.2-201ENST00000610957 190 ntBASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 AC010632.3-201ENST00000611377 369 ntBASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 AL122125.1-201ENST00000616999 600 ntBASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 NEAT1-202ENST00000501122 22743 ntBASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 SAMMSON-213ENST00000641336 1521 ntBASIC5.23□□□□□ -1.57
TRIM39Q9HCM9 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AL450326.2-201ENST00000421913 1962 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC092747.4-201ENST00000620519 1861 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC083843.2-201ENST00000568248 6253 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 DPPA2P1-201ENST00000428060 556 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 PSMA6P3-201ENST00000428242 164 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 OR4F13P-201ENST00000428478 931 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 CBX1P1-201ENST00000440184 427 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 GEMIN8P3-201ENST00000445417 720 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 RPL7P52-201ENST00000449200 742 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 TCEA1P1-201ENST00000449716 880 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 Z92846.1-201ENST00000456203 268 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 MTCO3P38-201ENST00000468910 766 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 MTND1P3-201ENST00000484956 952 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 HMGB1P21-201ENST00000502313 581 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC016065.2-201ENST00000514530 444 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 RNU6-718P-201ENST00000516166 105 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC024224.1-201ENST00000538284 609 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC127381.1-201ENST00000555979 939 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC025588.3-201ENST00000604182 274 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC009597.2-201ENST00000604659 592 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AL009028.1-201ENST00000604895 802 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AP002360.4-201ENST00000606980 481 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 OR10AB1P-201ENST00000609613 938 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC016769.4-201ENST00000616893 535 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AP002505.2-201ENST00000623585 696 ntBASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM39Q9HCM9 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.21□□□□□ -1.57
TRIM39Q9HCM9 AC104260.2-201ENST00000623551 3497 ntBASIC5.21□□□□□ -1.57
TRIM39Q9HCM9 AC090971.4-201ENST00000560291 1800 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AL022322.2-201ENST00000624072 20397 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 Y_RNA.46-201ENST00000362695 102 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 RN7SKP153-201ENST00000365026 316 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AL049697.2-201ENST00000403708 294 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 RPL7P25-201ENST00000404151 721 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 DUTP5-201ENST00000406790 469 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 BX295541.1-201ENST00000417774 250 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AC069213.2-201ENST00000420238 366 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 PIGFP2-201ENST00000421400 651 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 RPL7AP49-201ENST00000429522 581 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AL591438.1-201ENST00000433508 581 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AL627308.1-201ENST00000435693 821 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AC003071.1-201ENST00000451219 789 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AL389915.2-201ENST00000454576 441 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 MTCO3P20-201ENST00000454926 688 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 RN7SL799P-201ENST00000475891 298 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms