Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 RNA5SP97-201ENST00000365006 84 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 RHOT1P2-201ENST00000366423 333 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 RPS3AP9-201ENST00000417027 792 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AC092647.1-201ENST00000420654 287 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 HIGD1AP4-201ENST00000430194 280 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 RPL21P112-201ENST00000434403 463 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 FABP3P2-201ENST00000453169 399 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AC005726.1-201ENST00000494679 427 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 CAB39P1-201ENST00000502277 460 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 HMGN1P11-201ENST00000508668 303 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 RNU1-95P-201ENST00000516357 160 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 RNU1-128P-201ENST00000516704 160 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 MTND1P6-201ENST00000523621 946 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 OR5M7P-201ENST00000526140 972 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 OR5D17P-201ENST00000531492 978 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 CCNG2P1-201ENST00000549521 1000 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AC093510.2-201ENST00000562820 896 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AL139395.1-201ENST00000603662 160 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 IGHV3-29-201ENST00000604817 344 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AC005344.1-201ENST00000613391 459 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AL356094.1-201ENST00000624663 1212 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AP004289.2-201ENST00000444413 1457 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC011266.1-201ENST00000624119 3569 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 SNORA31-201ENST00000362607 130 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 RNA5SP399-201ENST00000364003 117 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 RNU6-374P-201ENST00000364146 108 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 SNORD65C-201ENST00000390962 71 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AL121972.1-201ENST00000402023 252 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 Z97055.1-201ENST00000419730 712 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AL009174.1-201ENST00000426577 416 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AL390879.2-203ENST00000426943 1121 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC096632.1-201ENST00000427395 310 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 HMGN3P1-201ENST00000453847 193 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 RPS6P4-201ENST00000494693 758 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AP001086.1-201ENST00000494882 321 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC025445.1-201ENST00000502728 300 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC026427.2-201ENST00000506228 536 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 PRELID3BP4-201ENST00000515476 571 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 RNU6-416P-201ENST00000516265 103 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 BPTFP1-201ENST00000579209 492 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 RN7SL622P-201ENST00000585292 275 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 SNRPGP15-201ENST00000600149 222 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC005156.1-201ENST00000613371 573 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 FP236240.3-201ENST00000623061 327 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 MIR4278-201ENST00000636094 69 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AL590396.4-201ENST00000636779 956 ntBASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.98□□□□□ -1.77
HDDC3Q8N4P3 AC097504.1-201ENST00000515103 2415 ntBASIC3.97□□□□□ -1.77
HDDC3Q8N4P3 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDDC3Q8N4P3 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDDC3Q8N4P3 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDDC3Q8N4P3 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.97□□□□□ -1.77
HDDC3Q8N4P3 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDDC3Q8N4P3 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
HDDC3Q8N4P3 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDDC3Q8N4P3 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDDC3Q8N4P3 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms