Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC098592.2-201ENST00000413158 265 ntBASIC4.48□□□□□ -1.69
MSH6P52701 NUP35P1-201ENST00000422734 947 ntBASIC4.48□□□□□ -1.69
MSH6P52701 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.48□□□□□ -1.69
MSH6P52701 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC4.48□□□□□ -1.69
MSH6P52701 AC105272.1-201ENST00000438604 198 ntBASIC4.48□□□□□ -1.69
MSH6P52701 MTND4LP12-201ENST00000448237 295 ntBASIC4.48□□□□□ -1.69
MSH6P52701 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.48□□□□□ -1.69
MSH6P52701 MTCO3P20-201ENST00000454926 688 ntBASIC4.48□□□□□ -1.69
MSH6P52701 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.48□□□□□ -1.69
MSH6P52701 RPS3AP50-201ENST00000487064 803 ntBASIC4.48□□□□□ -1.69
MSH6P52701 YWHAEP4-201ENST00000505390 198 ntBASIC4.48□□□□□ -1.69
MSH6P52701 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC4.48□□□□□ -1.69
MSH6P52701 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.48□□□□□ -1.69
MSH6P52701 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
MSH6P52701 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.48□□□□□ -1.69
MSH6P52701 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.48□□□□□ -1.69
MSH6P52701 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC4.48□□□□□ -1.69
MSH6P52701 AC015917.1-201ENST00000579654 510 ntBASIC4.48□□□□□ -1.69
MSH6P52701 AC067852.4-201ENST00000590314 478 ntBASIC4.48□□□□□ -1.69
MSH6P52701 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.48□□□□□ -1.69
MSH6P52701 AC245100.7-201ENST00000609678 442 ntBASIC4.48□□□□□ -1.69
MSH6P52701 AC244205.2-202ENST00000635781 342 ntBASIC4.48□□□□□ -1.69
MSH6P52701 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.48□□□□□ -1.69
MSH6P52701 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSH6P52701 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.48□□□□□ -1.69
MSH6P52701 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.48□□□□□ -1.69
MSH6P52701 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH6P52701 AC138393.1-206ENST00000540997 1886 ntBASIC4.47□□□□□ -1.69
MSH6P52701 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.47□□□□□ -1.69
MSH6P52701 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH6P52701 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
MSH6P52701 RPS26P40-201ENST00000435209 294 ntBASIC4.47□□□□□ -1.69
MSH6P52701 FTH1P1-201ENST00000437933 532 ntBASIC4.47□□□□□ -1.69
MSH6P52701 AL135938.1-201ENST00000443141 297 ntBASIC4.47□□□□□ -1.69
MSH6P52701 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH6P52701 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.47□□□□□ -1.69
MSH6P52701 AL121839.1-201ENST00000556233 1185 ntBASIC4.47□□□□□ -1.69
MSH6P52701 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.47□□□□□ -1.69
MSH6P52701 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC4.47□□□□□ -1.69
MSH6P52701 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH6P52701 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH6P52701 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH6P52701 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.47□□□□□ -1.69
MSH6P52701 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.47□□□□□ -1.69
MSH6P52701 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.47□□□□□ -1.69
MSH6P52701 MTCO1P8-201ENST00000416914 1523 ntBASIC4.47□□□□□ -1.69
MSH6P52701 AC068647.1-201ENST00000489539 2265 ntBASIC4.46□□□□□ -1.69
MSH6P52701 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH6P52701 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH6P52701 Z98941.1-201ENST00000407764 100 ntBASIC4.46□□□□□ -1.7
MSH6P52701 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH6P52701 OR6C72P-201ENST00000451403 892 ntBASIC4.46□□□□□ -1.7
MSH6P52701 OR7L1P-201ENST00000456181 380 ntBASIC4.46□□□□□ -1.7
MSH6P52701 HMGN2P7-201ENST00000456186 273 ntBASIC4.46□□□□□ -1.7
MSH6P52701 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
MSH6P52701 AC098583.1-201ENST00000480875 255 ntBASIC4.46□□□□□ -1.7
MSH6P52701 AC068724.1-201ENST00000487100 792 ntBASIC4.46□□□□□ -1.7
MSH6P52701 RNA5SP367-201ENST00000516557 118 ntBASIC4.46□□□□□ -1.7
MSH6P52701 AC025857.1-201ENST00000525252 377 ntBASIC4.46□□□□□ -1.7
MSH6P52701 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH6P52701 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.46□□□□□ -1.7
MSH6P52701 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
MSH6P52701 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.46□□□□□ -1.7
MSH6P52701 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH6P52701 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.46□□□□□ -1.7
MSH6P52701 AC025946.2-201ENST00000603398 234 ntBASIC4.46□□□□□ -1.7
MSH6P52701 AC015849.2-201ENST00000605738 409 ntBASIC4.46□□□□□ -1.7
MSH6P52701 AC067838.1-201ENST00000606064 577 ntBASIC4.46□□□□□ -1.7
MSH6P52701 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.46□□□□□ -1.7
MSH6P52701 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.46□□□□□ -1.7
MSH6P52701 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.45□□□□□ -1.7
MSH6P52701 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
MSH6P52701 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSH6P52701 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.45□□□□□ -1.7
MSH6P52701 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSH6P52701 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH6P52701 Y_RNA.62-201ENST00000362840 99 ntBASIC4.45□□□□□ -1.7
MSH6P52701 RPS4XP8-201ENST00000402039 771 ntBASIC4.45□□□□□ -1.7
MSH6P52701 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH6P52701 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH6P52701 AC093156.1-201ENST00000440382 670 ntBASIC4.45□□□□□ -1.7
MSH6P52701 TXNP1-201ENST00000441872 371 ntBASIC4.45□□□□□ -1.7
MSH6P52701 Y_RNA.638-201ENST00000459374 113 ntBASIC4.45□□□□□ -1.7
MSH6P52701 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.45□□□□□ -1.7
MSH6P52701 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH6P52701 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.45□□□□□ -1.7
MSH6P52701 AC091544.4-201ENST00000555268 342 ntBASIC4.45□□□□□ -1.7
MSH6P52701 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH6P52701 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.45□□□□□ -1.7
MSH6P52701 BDH2P1-201ENST00000602288 736 ntBASIC4.45□□□□□ -1.7
MSH6P52701 AL159169.2-201ENST00000610061 1269 ntBASIC4.45□□□□□ -1.7
MSH6P52701 SNORD39.4-201ENST00000620099 78 ntBASIC4.45□□□□□ -1.7
MSH6P52701 AC099506.2-201ENST00000623074 221 ntBASIC4.45□□□□□ -1.7
MSH6P52701 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSH6P52701 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSH6P52701 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSH6P52701 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSH6P52701 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.45□□□□□ -1.7
MSH6P52701 AL672296.1-201ENST00000427780 2158 ntBASIC4.45□□□□□ -1.7
MSH6P52701 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms