Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.78□□□□□ -1.8
SOX3P41225 AC007599.1-201ENST00000568688 1174 ntBASIC3.78□□□□□ -1.8
SOX3P41225 NF1P5-201ENST00000588287 448 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX3P41225 AL020997.2-201ENST00000602607 184 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AC022022.2-201ENST00000602989 360 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.78□□□□□ -1.8
SOX3P41225 AC021749.1-201ENST00000604322 607 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AC093424.1-201ENST00000604999 338 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AC007390.2-201ENST00000606229 3803 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX3P41225 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX3P41225 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.78□□□□□ -1.8
SOX3P41225 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.78□□□□□ -1.8
SOX3P41225 AC006927.4-201ENST00000639187 543 ntBASIC3.78□□□□□ -1.8
SOX3P41225 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX3P41225 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
SOX3P41225 ERCC6-202ENST00000374127 1782 ntBASIC3.78□□□□□ -1.8
SOX3P41225 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX3P41225 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX3P41225 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX3P41225 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.81
SOX3P41225 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
SOX3P41225 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SOX3P41225 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX3P41225 RNA5SP322-201ENST00000363617 119 ntBASIC3.77□□□□□ -1.81
SOX3P41225 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.77□□□□□ -1.81
SOX3P41225 SNORA37-201ENST00000384504 129 ntBASIC3.77□□□□□ -1.81
SOX3P41225 MIR217-201ENST00000384817 110 ntBASIC3.77□□□□□ -1.81
SOX3P41225 ERHP2-201ENST00000402323 299 ntBASIC3.77□□□□□ -1.81
SOX3P41225 PPIAP31-201ENST00000405422 495 ntBASIC3.77□□□□□ -1.81
SOX3P41225 HNRNPDP2-201ENST00000406475 478 ntBASIC3.77□□□□□ -1.81
SOX3P41225 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX3P41225 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX3P41225 OR5BE1P-201ENST00000425977 939 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AL158073.1-201ENST00000426848 1104 ntBASIC3.77□□□□□ -1.81
SOX3P41225 MTCO1P3-201ENST00000429327 192 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AC011742.1-201ENST00000431448 434 ntBASIC3.77□□□□□ -1.81
SOX3P41225 RPL12P46-201ENST00000436610 195 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX3P41225 HMGB1P48-201ENST00000446155 598 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX3P41225 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX3P41225 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX3P41225 RPL29P14-201ENST00000495837 428 ntBASIC3.77□□□□□ -1.81
SOX3P41225 DYNLL1P6-201ENST00000503440 264 ntBASIC3.77□□□□□ -1.81
SOX3P41225 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX3P41225 KRT19P6-201ENST00000510983 209 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AC108064.1-201ENST00000513791 460 ntBASIC3.77□□□□□ -1.81
SOX3P41225 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX3P41225 RNA5SP135-201ENST00000517019 125 ntBASIC3.77□□□□□ -1.81
SOX3P41225 IGKV2-38-201ENST00000517443 247 ntBASIC3.77□□□□□ -1.81
SOX3P41225 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX3P41225 OR4A2P-201ENST00000527276 913 ntBASIC3.77□□□□□ -1.81
SOX3P41225 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SOX3P41225 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.77□□□□□ -1.81
SOX3P41225 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX3P41225 MTND4P33-201ENST00000556706 766 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX3P41225 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX3P41225 AC023813.2-201ENST00000564321 469 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX3P41225 RPL23AP87-202ENST00000573039 466 ntBASIC3.77□□□□□ -1.81
SOX3P41225 MIR5684-201ENST00000585074 65 ntBASIC3.77□□□□□ -1.81
SOX3P41225 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX3P41225 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SOX3P41225 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX3P41225 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SOX3P41225 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX3P41225 MTND3P19-201ENST00000603825 345 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AL451044.1-201ENST00000604867 238 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX3P41225 AC128687.2-201ENST00000609657 566 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AC090246.1-201ENST00000616499 426 ntBASIC3.77□□□□□ -1.81
SOX3P41225 AC243756.2-201ENST00000618406 463 ntBASIC3.77□□□□□ -1.81
SOX3P41225 OR5BE1P-202ENST00000641168 1176 ntBASIC3.77□□□□□ -1.81
SOX3P41225 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
SOX3P41225 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.77□□□□□ -1.81
SOX3P41225 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
SOX3P41225 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX3P41225 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
SOX3P41225 AL031985.3-201ENST00000565390 2449 ntBASIC3.76□□□□□ -1.81
SOX3P41225 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
SOX3P41225 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SOX3P41225 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
SOX3P41225 AP005901.5-201ENST00000545779 1796 ntBASIC3.76□□□□□ -1.81
SOX3P41225 SEPT7P7-201ENST00000420492 1301 ntBASIC3.76□□□□□ -1.81
SOX3P41225 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
SOX3P41225 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.76□□□□□ -1.81
SOX3P41225 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.76□□□□□ -1.81
SOX3P41225 HMGB1P5-201ENST00000255320 642 ntBASIC3.76□□□□□ -1.81
SOX3P41225 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
SOX3P41225 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
SOX3P41225 SNORA60-201ENST00000362396 134 ntBASIC3.76□□□□□ -1.81
SOX3P41225 Y_RNA.126-201ENST00000363382 111 ntBASIC3.76□□□□□ -1.81
SOX3P41225 HSPD1P16-201ENST00000402302 394 ntBASIC3.76□□□□□ -1.81
SOX3P41225 PRRC2CP1-201ENST00000404428 159 ntBASIC3.76□□□□□ -1.81
SOX3P41225 AL603766.1-201ENST00000407763 664 ntBASIC3.76□□□□□ -1.81
SOX3P41225 RNU4-6P-201ENST00000410804 122 ntBASIC3.76□□□□□ -1.81
SOX3P41225 PRELID3BP11-201ENST00000414230 479 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms