Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
COL8A1P27658 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
COL8A1P27658 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC5.63□□□□□ -1.51
COL8A1P27658 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.62□□□□□ -1.51
COL8A1P27658 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL8A1P27658 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 DDX18P3-201ENST00000404856 2007 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AC244517.1-201ENST00000606030 2086 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.62□□□□□ -1.51
COL8A1P27658 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC5.62□□□□□ -1.51
COL8A1P27658 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
COL8A1P27658 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 RNU6-493P-201ENST00000391321 108 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AL590762.1-201ENST00000391782 432 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AL136131.1-201ENST00000406079 803 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 SPTLC1P2-201ENST00000407089 121 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 RN7SKP296-201ENST00000411185 341 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.62□□□□□ -1.51
COL8A1P27658 AL663061.1-201ENST00000416625 580 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC5.62□□□□□ -1.51
COL8A1P27658 SUMO2P3-201ENST00000438311 288 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 HIGD1AP11-201ENST00000438361 280 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 PTMAP6-201ENST00000439110 327 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AP006222.1-205ENST00000450734 457 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 SNORD5.1-201ENST00000458800 75 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC5.62□□□□□ -1.51
COL8A1P27658 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.62□□□□□ -1.51
COL8A1P27658 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.62□□□□□ -1.51
COL8A1P27658 RN7SKP82-201ENST00000516786 223 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.62□□□□□ -1.51
COL8A1P27658 AP003733.2-201ENST00000529409 171 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC5.62□□□□□ -1.51
COL8A1P27658 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.62□□□□□ -1.51
COL8A1P27658 RPA2P1-201ENST00000556557 721 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 SUB1P3-201ENST00000564581 315 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.62□□□□□ -1.51
COL8A1P27658 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 MIR5188-201ENST00000583467 113 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 AL353997.4-201ENST00000586196 166 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AL512782.1-201ENST00000603093 364 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AC010900.2-201ENST00000604508 210 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 Six3os1_4.1-201ENST00000615706 324 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AL512652.1-201ENST00000619006 500 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AC130454.1-201ENST00000622948 401 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AC018445.2-201ENST00000622987 260 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC5.62□□□□□ -1.51
COL8A1P27658 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC5.62□□□□□ -1.51
COL8A1P27658 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL8A1P27658 AC108751.5-201ENST00000492880 1336 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.62□□□□□ -1.51
COL8A1P27658 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
COL8A1P27658 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 MRE11P1-201ENST00000464884 2127 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
COL8A1P27658 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL8A1P27658 AC015871.3-201ENST00000618835 2261 ntBASIC5.62□□□□□ -1.51
COL8A1P27658 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.61□□□□□ -1.51
COL8A1P27658 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 ERG-202ENST00000398897 4651 ntTSL 5 BASIC5.61□□□□□ -1.51
COL8A1P27658 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
COL8A1P27658 Y_RNA.126-201ENST00000363382 111 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 RPL9P21-201ENST00000392269 505 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms