Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 snoU13.7-201ENST00000459220 104 ntBASIC3.2□□□□□ -1.9
USF1P22415 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.2□□□□□ -1.9
USF1P22415 AC078817.1-201ENST00000492623 435 ntBASIC3.2□□□□□ -1.9
USF1P22415 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.2□□□□□ -1.9
USF1P22415 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.2□□□□□ -1.9
USF1P22415 AC104619.4-201ENST00000510773 249 ntBASIC3.2□□□□□ -1.9
USF1P22415 SCARNA14-201ENST00000516903 136 ntBASIC3.2□□□□□ -1.9
USF1P22415 SOD1P3-201ENST00000518682 454 ntBASIC3.2□□□□□ -1.9
USF1P22415 AC022695.1-201ENST00000522089 237 ntBASIC3.2□□□□□ -1.9
USF1P22415 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.2□□□□□ -1.9
USF1P22415 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.2□□□□□ -1.9
USF1P22415 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.2□□□□□ -1.9
USF1P22415 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.2□□□□□ -1.9
USF1P22415 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC3.2□□□□□ -1.9
USF1P22415 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.2□□□□□ -1.9
USF1P22415 AC027104.1-201ENST00000563702 681 ntBASIC3.2□□□□□ -1.9
USF1P22415 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.2□□□□□ -1.9
USF1P22415 AC125494.3-201ENST00000602759 455 ntBASIC3.2□□□□□ -1.9
USF1P22415 AP001033.2-201ENST00000609701 1003 ntBASIC3.2□□□□□ -1.9
USF1P22415 AC020658.4-201ENST00000613987 684 ntBASIC3.2□□□□□ -1.9
USF1P22415 MTND5P3-201ENST00000438536 1800 ntBASIC3.2□□□□□ -1.9
USF1P22415 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.2□□□□□ -1.9
USF1P22415 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.2□□□□□ -1.9
USF1P22415 AC011978.2-201ENST00000569835 2054 ntBASIC3.2□□□□□ -1.9
USF1P22415 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.19□□□□□ -1.9
USF1P22415 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USF1P22415 MTCO1P12-201ENST00000414273 1543 ntBASIC3.19□□□□□ -1.9
USF1P22415 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.19□□□□□ -1.9
USF1P22415 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
USF1P22415 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USF1P22415 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USF1P22415 SNORD3H-201ENST00000384486 214 ntBASIC3.19□□□□□ -1.9
USF1P22415 AC007066.1-201ENST00000392902 381 ntBASIC3.19□□□□□ -1.9
USF1P22415 HMGB3P18-201ENST00000406327 590 ntBASIC3.19□□□□□ -1.9
USF1P22415 Z98941.1-201ENST00000407764 100 ntBASIC3.19□□□□□ -1.9
USF1P22415 UBE2V1P11-201ENST00000411559 285 ntBASIC3.19□□□□□ -1.9
USF1P22415 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.19□□□□□ -1.9
USF1P22415 OR5AW1P-201ENST00000426334 1006 ntBASIC3.19□□□□□ -1.9
USF1P22415 AL390879.2-203ENST00000426943 1121 ntBASIC3.19□□□□□ -1.9
USF1P22415 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.19□□□□□ -1.9
USF1P22415 ARF4P2-201ENST00000430209 526 ntBASIC3.19□□□□□ -1.9
USF1P22415 USP9YP31-201ENST00000431405 881 ntBASIC3.19□□□□□ -1.9
USF1P22415 AC083863.1-201ENST00000438811 231 ntBASIC3.19□□□□□ -1.9
USF1P22415 PRDX3P3-201ENST00000447765 522 ntBASIC3.19□□□□□ -1.9
USF1P22415 AC104978.1-201ENST00000449387 391 ntBASIC3.19□□□□□ -1.9
USF1P22415 AL513343.1-201ENST00000451818 792 ntBASIC3.19□□□□□ -1.9
USF1P22415 BX276092.4-201ENST00000452056 248 ntBASIC3.19□□□□□ -1.9
USF1P22415 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.19□□□□□ -1.9
USF1P22415 TVP23BP2-201ENST00000455082 615 ntBASIC3.19□□□□□ -1.9
USF1P22415 RNU7-170P-201ENST00000459303 61 ntBASIC3.19□□□□□ -1.9
USF1P22415 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.19□□□□□ -1.9
USF1P22415 AC106707.2-201ENST00000484182 374 ntBASIC3.19□□□□□ -1.9
USF1P22415 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.19□□□□□ -1.9
USF1P22415 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.19□□□□□ -1.9
USF1P22415 AC008565.1-201ENST00000509046 885 ntBASIC3.19□□□□□ -1.9
USF1P22415 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.19□□□□□ -1.9
USF1P22415 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.19□□□□□ -1.9
USF1P22415 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USF1P22415 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.19□□□□□ -1.9
USF1P22415 OR6C73P-201ENST00000546432 358 ntBASIC3.19□□□□□ -1.9
USF1P22415 AL442163.2-201ENST00000553912 710 ntBASIC3.19□□□□□ -1.9
USF1P22415 GTF2IP22-201ENST00000554443 182 ntBASIC3.19□□□□□ -1.9
USF1P22415 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.19□□□□□ -1.9
USF1P22415 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.19□□□□□ -1.9
USF1P22415 EIF1P6-201ENST00000600054 334 ntBASIC3.19□□□□□ -1.9
USF1P22415 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.19□□□□□ -1.9
USF1P22415 AL354760.1-201ENST00000608357 643 ntBASIC3.19□□□□□ -1.9
USF1P22415 OR2BH1P-201ENST00000608850 864 ntBASIC3.19□□□□□ -1.9
USF1P22415 AC096577.2-201ENST00000611455 153 ntBASIC3.19□□□□□ -1.9
USF1P22415 U7.8-201ENST00000619968 63 ntBASIC3.19□□□□□ -1.9
USF1P22415 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.19□□□□□ -1.9
USF1P22415 AL357559.1-201ENST00000622228 274 ntBASIC3.19□□□□□ -1.9
USF1P22415 AC024595.1-201ENST00000623088 387 ntBASIC3.19□□□□□ -1.9
USF1P22415 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USF1P22415 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USF1P22415 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.19□□□□□ -1.9
USF1P22415 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
USF1P22415 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USF1P22415 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
USF1P22415 RPS4XP5-202ENST00000449995 1334 ntBASIC3.19□□□□□ -1.9
USF1P22415 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USF1P22415 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USF1P22415 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
USF1P22415 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USF1P22415 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USF1P22415 RNU6-543P-201ENST00000362576 108 ntBASIC3.18□□□□□ -1.9
USF1P22415 MIR218-2-201ENST00000385006 110 ntBASIC3.18□□□□□ -1.9
USF1P22415 MIR199A2-201ENST00000385289 110 ntBASIC3.18□□□□□ -1.9
USF1P22415 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
USF1P22415 BTBD10P2-201ENST00000404779 676 ntBASIC3.18□□□□□ -1.9
USF1P22415 AC092745.2-202ENST00000411880 369 ntBASIC3.18□□□□□ -1.9
USF1P22415 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.18□□□□□ -1.9
USF1P22415 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.18□□□□□ -1.9
USF1P22415 AC009237.5-201ENST00000414271 501 ntBASIC3.18□□□□□ -1.9
USF1P22415 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC3.18□□□□□ -1.9
USF1P22415 TCEA1P2-201ENST00000420496 906 ntBASIC3.18□□□□□ -1.9
USF1P22415 PNRC2P1-201ENST00000423940 420 ntBASIC3.18□□□□□ -1.9
USF1P22415 PSMA2P3-201ENST00000429685 675 ntBASIC3.18□□□□□ -1.9
USF1P22415 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.18□□□□□ -1.9
USF1P22415 RPL23AP33-201ENST00000442301 452 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms