Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-1078P-201ENST00000364522 103 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 U3.52-201ENST00000384034 216 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 SNORA69.1-201ENST00000390904 137 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 RPS4XP7-201ENST00000406274 780 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 CYP4F29P-201ENST00000420685 446 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
COL9A1P20849 EZH2P1-201ENST00000431167 291 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 AL513124.1-201ENST00000450410 614 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.85□□□□□ -1.31
COL9A1P20849 AC091021.1-201ENST00000468051 388 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 RPL23AP64-201ENST00000469465 435 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 AC100870.1-201ENST00000522035 505 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.85□□□□□ -1.31
COL9A1P20849 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC6.85□□□□□ -1.31
COL9A1P20849 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.85□□□□□ -1.31
COL9A1P20849 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC6.85□□□□□ -1.31
COL9A1P20849 AL589674.2-201ENST00000604304 337 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 MIR1244-1-201ENST00000612829 85 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 MIR1244-3-201ENST00000635744 85 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 MIR1244-2-201ENST00000636449 85 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 MIR1244-4-202ENST00000636813 85 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 GTF2IRD2P1-201ENST00000449689 2749 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 AC132219.2-201ENST00000624416 2327 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 AC005614.1-201ENST00000598952 3653 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
COL9A1P20849 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 CACNA1D-219ENST00000636938 6868 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 IRF5P1-201ENST00000504852 2164 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
COL9A1P20849 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC6.85□□□□□ -1.31
COL9A1P20849 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.85□□□□□ -1.31
COL9A1P20849 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC6.84□□□□□ -1.31
COL9A1P20849 SERPINB13-201ENST00000269489 3206 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 SYCP1-202ENST00000369522 3522 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
COL9A1P20849 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.31
COL9A1P20849 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
COL9A1P20849 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC6.84□□□□□ -1.31
COL9A1P20849 RNU1-84P-201ENST00000365447 164 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 AL359694.1-201ENST00000403247 604 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 SDHDP6-201ENST00000414693 480 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 RPS12P5-201ENST00000423449 371 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 GSTA6P-201ENST00000424144 582 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 AL031659.1-201ENST00000447075 539 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 AL353691.1-201ENST00000451332 387 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 CFL1P4-201ENST00000451536 498 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 FABP5P13-201ENST00000452144 328 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 RPL21P104-201ENST00000464143 478 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC6.84□□□□□ -1.31
COL9A1P20849 SEPT14P8-201ENST00000508026 178 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
COL9A1P20849 Y_RNA.662-201ENST00000516028 97 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 AF186190.1-201ENST00000517470 480 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.84□□□□□ -1.31
COL9A1P20849 AC008962.1-201ENST00000605729 304 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC6.84□□□□□ -1.31
COL9A1P20849 AC243654.2-201ENST00000612843 443 ntBASIC6.84□□□□□ -1.31
COL9A1P20849 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL9A1P20849 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC6.84□□□□□ -1.32
COL9A1P20849 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL9A1P20849 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC6.84□□□□□ -1.32
COL9A1P20849 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC6.84□□□□□ -1.32
COL9A1P20849 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL9A1P20849 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL9A1P20849 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL9A1P20849 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC6.84□□□□□ -1.32
COL9A1P20849 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC6.84□□□□□ -1.32
COL9A1P20849 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL9A1P20849 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC6.83□□□□□ -1.32
COL9A1P20849 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL9A1P20849 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC6.83□□□□□ -1.32
COL9A1P20849 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL9A1P20849 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms