Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.79□□□□□ -1.8
SDC3O75056 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.79□□□□□ -1.8
SDC3O75056 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.79□□□□□ -1.8
SDC3O75056 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.79□□□□□ -1.8
SDC3O75056 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.79□□□□□ -1.8
SDC3O75056 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.79□□□□□ -1.8
SDC3O75056 RNU5A-7P-201ENST00000515979 116 ntBASIC3.79□□□□□ -1.8
SDC3O75056 IGKV2D-23-201ENST00000518179 286 ntBASIC3.79□□□□□ -1.8
SDC3O75056 DUXAP2-201ENST00000519198 589 ntBASIC3.79□□□□□ -1.8
SDC3O75056 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.79□□□□□ -1.8
SDC3O75056 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SDC3O75056 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.79□□□□□ -1.8
SDC3O75056 AC022968.1-201ENST00000567372 442 ntBASIC3.79□□□□□ -1.8
SDC3O75056 AC009101.1-201ENST00000568135 242 ntBASIC3.79□□□□□ -1.8
SDC3O75056 MIR4644-201ENST00000579929 84 ntBASIC3.79□□□□□ -1.8
SDC3O75056 RN7SL622P-201ENST00000585292 275 ntBASIC3.79□□□□□ -1.8
SDC3O75056 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.79□□□□□ -1.8
SDC3O75056 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDC3O75056 AL591424.2-201ENST00000617023 128 ntBASIC3.79□□□□□ -1.8
SDC3O75056 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.79□□□□□ -1.8
SDC3O75056 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.79□□□□□ -1.8
SDC3O75056 FAM35DP-201ENST00000323387 2712 ntBASIC3.79□□□□□ -1.8
SDC3O75056 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SDC3O75056 ZNF849P-201ENST00000594711 1566 ntBASIC3.79□□□□□ -1.8
SDC3O75056 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SDC3O75056 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.79□□□□□ -1.8
SDC3O75056 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.78□□□□□ -1.8
SDC3O75056 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
SDC3O75056 MTCO1P6-201ENST00000481192 1384 ntBASIC3.78□□□□□ -1.8
SDC3O75056 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SDC3O75056 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SDC3O75056 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.78□□□□□ -1.8
SDC3O75056 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.78□□□□□ -1.8
SDC3O75056 RNU6-468P-201ENST00000384003 109 ntBASIC3.78□□□□□ -1.8
SDC3O75056 ATP5F1P4-201ENST00000397288 746 ntBASIC3.78□□□□□ -1.8
SDC3O75056 BTBD10P2-201ENST00000404779 676 ntBASIC3.78□□□□□ -1.8
SDC3O75056 AL138878.1-201ENST00000405131 347 ntBASIC3.78□□□□□ -1.8
SDC3O75056 ZNF602P-201ENST00000405929 924 ntBASIC3.78□□□□□ -1.8
SDC3O75056 RN7SKP56-201ENST00000410513 331 ntBASIC3.78□□□□□ -1.8
SDC3O75056 RNU6-272P-201ENST00000411028 104 ntBASIC3.78□□□□□ -1.8
SDC3O75056 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.78□□□□□ -1.8
SDC3O75056 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SDC3O75056 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.78□□□□□ -1.8
SDC3O75056 SYF2P2-201ENST00000417620 583 ntBASIC3.78□□□□□ -1.8
SDC3O75056 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SDC3O75056 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.78□□□□□ -1.8
SDC3O75056 HMGB3P22-202ENST00000451823 572 ntBASIC3.78□□□□□ -1.8
SDC3O75056 SNRPGP5-201ENST00000456003 220 ntBASIC3.78□□□□□ -1.8
SDC3O75056 RPL21P71-201ENST00000465598 459 ntBASIC3.78□□□□□ -1.8
SDC3O75056 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.78□□□□□ -1.8
SDC3O75056 AC006517.1-201ENST00000480485 328 ntBASIC3.78□□□□□ -1.8
SDC3O75056 AC006499.5-201ENST00000505037 514 ntBASIC3.78□□□□□ -1.8
SDC3O75056 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.78□□□□□ -1.8
SDC3O75056 MTCO3P27-201ENST00000514397 196 ntBASIC3.78□□□□□ -1.8
SDC3O75056 Vault.1-201ENST00000516474 102 ntBASIC3.78□□□□□ -1.8
SDC3O75056 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.78□□□□□ -1.8
SDC3O75056 AP003355.1-201ENST00000518956 587 ntBASIC3.78□□□□□ -1.8
SDC3O75056 OR8L1P-201ENST00000534005 955 ntBASIC3.78□□□□□ -1.8
SDC3O75056 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.78□□□□□ -1.8
SDC3O75056 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.78□□□□□ -1.8
SDC3O75056 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.78□□□□□ -1.8
SDC3O75056 AC007599.1-201ENST00000568688 1174 ntBASIC3.78□□□□□ -1.8
SDC3O75056 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.78□□□□□ -1.8
SDC3O75056 AC104662.1-201ENST00000604448 511 ntBASIC3.78□□□□□ -1.8
SDC3O75056 AL049634.3-201ENST00000604968 457 ntBASIC3.78□□□□□ -1.8
SDC3O75056 AC016542.1-201ENST00000608259 493 ntBASIC3.78□□□□□ -1.8
SDC3O75056 AC018926.1-201ENST00000616335 435 ntBASIC3.78□□□□□ -1.8
SDC3O75056 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.78□□□□□ -1.8
SDC3O75056 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.78□□□□□ -1.8
SDC3O75056 MFSD8-236ENST00000641509 4050 ntBASIC3.78□□□□□ -1.8
SDC3O75056 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SDC3O75056 AL592494.2-201ENST00000425455 1548 ntBASIC3.78□□□□□ -1.8
SDC3O75056 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SDC3O75056 ZNF962P-201ENST00000443465 3140 ntBASIC3.78□□□□□ -1.8
SDC3O75056 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SDC3O75056 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SDC3O75056 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.78□□□□□ -1.81
SDC3O75056 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SDC3O75056 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SDC3O75056 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SDC3O75056 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
SDC3O75056 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
SDC3O75056 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
SDC3O75056 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SDC3O75056 AL035405.1-201ENST00000400795 710 ntBASIC3.77□□□□□ -1.81
SDC3O75056 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.77□□□□□ -1.81
SDC3O75056 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.77□□□□□ -1.81
SDC3O75056 SNORA3C-201ENST00000408792 125 ntBASIC3.77□□□□□ -1.81
SDC3O75056 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.77□□□□□ -1.81
SDC3O75056 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.77□□□□□ -1.81
SDC3O75056 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.77□□□□□ -1.81
SDC3O75056 DEFB130D-201ENST00000426866 237 ntBASIC3.77□□□□□ -1.81
SDC3O75056 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.77□□□□□ -1.81
SDC3O75056 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.77□□□□□ -1.81
SDC3O75056 CKS1BP5-201ENST00000434172 273 ntBASIC3.77□□□□□ -1.81
SDC3O75056 HSPD1P21-201ENST00000436541 245 ntBASIC3.77□□□□□ -1.81
SDC3O75056 YWHAZP8-201ENST00000436935 731 ntBASIC3.77□□□□□ -1.81
SDC3O75056 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.77□□□□□ -1.81
SDC3O75056 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.77□□□□□ -1.81
SDC3O75056 PDSS1P2-201ENST00000449397 678 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms