Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.53□□□□□ -1.68
HOXA3O43365 AL049779.3-201ENST00000557141 606 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA3O43365 Z84480.1-201ENST00000605131 311 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 AL445222.1-201ENST00000607259 628 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 AL512329.2-201ENST00000607350 548 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 AC009233.1-201ENST00000616477 371 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 AL355974.3-201ENST00000617383 467 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 MIR6864-201ENST00000617935 70 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 CR381572.1-201ENST00000625098 102 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA3O43365 AC112487.2-201ENST00000637950 304 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 SAMMSON-227ENST00000642114 1199 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXA3O43365 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
HOXA3O43365 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA3O43365 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA3O43365 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA3O43365 PABPC1P6-201ENST00000445594 1829 ntBASIC4.53□□□□□ -1.68
HOXA3O43365 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
HOXA3O43365 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA3O43365 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA3O43365 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
HOXA3O43365 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
HOXA3O43365 ELL2P4-201ENST00000446870 1376 ntBASIC4.53□□□□□ -1.69
HOXA3O43365 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXA3O43365 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 AL359955.1-201ENST00000455242 3275 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 AL161756.3-201ENST00000641216 2071 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 AC006026.1-201ENST00000444025 1803 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA3O43365 RNU4-73P-201ENST00000363164 141 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 RNY1P12-201ENST00000364251 105 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 RNA5-8SP5-201ENST00000365304 152 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 RNU6-116P-201ENST00000384042 109 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 Y_RNA.529-201ENST00000384586 119 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 MIR130A-201ENST00000385274 89 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 RNU1-77P-201ENST00000390868 162 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 snosnR66.1-201ENST00000391095 99 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA3O43365 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 RNA5SP118-201ENST00000410385 109 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXA3O43365 RSU1P3-201ENST00000412878 835 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.52□□□□□ -1.69
HOXA3O43365 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC099336.2-201ENST00000422457 254 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC008850.1-201ENST00000427546 362 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 RPL7L1P9-201ENST00000431298 745 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 CYCSP6-201ENST00000434498 302 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC006335.2-201ENST00000437993 330 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC105402.2-201ENST00000438503 358 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 BNIP3P2-201ENST00000441221 577 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA3O43365 MEMO1P4-201ENST00000453590 386 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 AC099560.2-201ENST00000457554 255 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 RPS4XP1-201ENST00000482189 787 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AL035690.1-201ENST00000490892 383 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC139783.2-201ENST00000504847 1145 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC111000.3-201ENST00000508057 576 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC010486.1-201ENST00000511793 424 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC022616.3-201ENST00000523940 148 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AP000907.2-201ENST00000530827 353 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 RPS3AP23-202ENST00000574601 686 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA3O43365 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC110743.1-201ENST00000584870 478 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC011712.1-201ENST00000588959 234 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC025857.2-201ENST00000602711 238 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 RPL26P30-202ENST00000602923 645 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AC007497.1-201ENST00000610421 561 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC009318.4-201ENST00000620496 486 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 MIR6730-201ENST00000622213 67 ntBASIC4.52□□□□□ -1.69
HOXA3O43365 UBA3-213ENST00000631029 123 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.52□□□□□ -1.69
HOXA3O43365 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXA3O43365 GVINP1-202ENST00000531871 7271 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms