Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AP002360.3-201ENST00000607673 710 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AC244100.1-202ENST00000621554 382 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AL391262.2-201ENST00000622466 494 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 MIR6500-201ENST00000622700 86 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AL121978.1-201ENST00000402778 359 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AL590704.1-201ENST00000402856 794 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 SFR1P1-201ENST00000403720 688 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 RAB11AP1-201ENST00000442978 646 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 Z99714.1-201ENST00000450463 807 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 RPS15AP1-201ENST00000457423 391 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AP001086.1-201ENST00000494882 321 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 SUMO2P5-201ENST00000506790 245 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 MTATP6P9-201ENST00000515039 680 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC006064.5-201ENST00000541782 248 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 RPL23AP97-201ENST00000568955 471 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 MTCO1P40-201ENST00000574371 625 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 YWHAQP7-201ENST00000603536 658 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC144521.1-201ENST00000607148 956 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC097504.2-201ENST00000608088 454 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC015813.4-201ENST00000610469 179 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC004808.1-201ENST00000627671 721 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC139713.2-210ENST00000641741 992 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 BX649567.1-201ENST00000642071 1134 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 AC016588.2-201ENST00000632484 3021 ntBASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PCDHGA1Q9Y5H4 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 MTND5P31-201ENST00000419366 1374 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 RNU1-108P-201ENST00000362556 161 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 RNU6-236P-201ENST00000363886 106 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 Y_RNA.333-201ENST00000365274 102 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 EI24P1-201ENST00000416584 867 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 TAF13P2-201ENST00000416876 286 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 TCEA1P2-201ENST00000420496 906 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 PDSS1P1-201ENST00000422953 1114 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 YME1L1P1-201ENST00000429435 297 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 RPL36P19-201ENST00000430744 301 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AC011242.1-201ENST00000433596 1158 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AL138799.3-201ENST00000438968 350 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 MTATP6P14-201ENST00000455189 673 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AC006499.6-201ENST00000511169 607 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AC016065.2-201ENST00000514530 444 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 MTCO1P30-201ENST00000515244 580 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 RN7SKP157-201ENST00000516174 282 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 NIFKP8-201ENST00000560500 874 ntBASIC4.03□□□□□ -1.76
PCDHGA1Q9Y5H4 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms