Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 OR5M2P-201ENST00000529003 936 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AL121766.1-201ENST00000547436 487 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC023161.2-201ENST00000551218 780 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC090515.3-201ENST00000560431 315 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 BNIP3P22-201ENST00000593399 556 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC093765.1-201ENST00000603758 881 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AL590392.1-201ENST00000604960 446 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC006270.3-201ENST00000605967 1036 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC090948.2-201ENST00000607363 564 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC073114.1-201ENST00000612027 490 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 AC092650.2-201ENST00000619984 902 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS4AQ9UN37 SAMMSON-226ENST00000642089 1582 ntBASIC4.59□□□□□ -1.67
VPS4AQ9UN37 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.59□□□□□ -1.68
VPS4AQ9UN37 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 KARSP3-201ENST00000571212 1504 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL672167.1-206ENST00000356293 943 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 Y_RNA.126-201ENST00000363382 111 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 RNA5SP479-201ENST00000364858 117 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 MT-TH-201ENST00000387441 69 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 RPL23AP29-201ENST00000397284 453 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 MTCYBP38-201ENST00000417160 1123 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL359265.2-201ENST00000434367 631 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 MTCYBP39-201ENST00000437562 491 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 RPL23AP15-201ENST00000450202 459 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 USP9YP10-201ENST00000454868 628 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL445433.1-201ENST00000457507 257 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC010326.1-201ENST00000462726 602 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 RN7SL558P-201ENST00000497468 299 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 SETP14-201ENST00000497538 873 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC104685.1-201ENST00000502445 371 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 DSTNP2-201ENST00000504533 515 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 USP9YP5-201ENST00000511770 630 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 RNY4P37-201ENST00000516225 96 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 SOD1P3-201ENST00000518682 454 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 RPL12P22-201ENST00000519073 490 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC092851.1-201ENST00000535964 478 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL389895.1-201ENST00000554127 252 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 MIR7844-201ENST00000616161 122 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC018816.2-201ENST00000621460 353 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AC127502.3-201ENST00000636170 1206 ntBASIC4.58□□□□□ -1.68
VPS4AQ9UN37 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4AQ9UN37 AL445487.1-201ENST00000415694 1580 ntBASIC4.57□□□□□ -1.68
VPS4AQ9UN37 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4AQ9UN37 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
VPS4AQ9UN37 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4AQ9UN37 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
VPS4AQ9UN37 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4AQ9UN37 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
VPS4AQ9UN37 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 127.8 ms