Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 MIR4470-201ENST00000583453 72 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 AP001823.1-201ENST00000604056 1003 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 FAM27E4-201ENST00000605259 342 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 AL355333.1-201ENST00000605632 279 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 DDX18P3-201ENST00000404856 2007 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 AC018628.1-201ENST00000624147 3819 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 AL359854.1-201ENST00000614203 1594 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 AC004158.1-201ENST00000564508 4319 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC116667.1-201ENST00000604855 2072 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 RN7SKP95-201ENST00000362860 303 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 Y_RNA.84-201ENST00000363011 104 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 Y_RNA.200-201ENST00000364018 102 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 Y_RNA.237-201ENST00000364439 102 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 RNU6-701P-201ENST00000384059 107 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 RNU2-33P-201ENST00000410344 192 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 RNU6-121P-201ENST00000410525 99 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 MTCO3P29-201ENST00000432119 779 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 CEACAMP6-201ENST00000452007 574 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC013470.1-201ENST00000453438 462 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC091982.1-202ENST00000473923 343 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 RN7SL849P-201ENST00000485236 295 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 RN7SL797P-201ENST00000486314 297 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AL591122.1-201ENST00000487348 492 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 MIR4273-201ENST00000582824 84 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 RN7SL178P-201ENST00000582930 304 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC010620.2-201ENST00000600135 313 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC092032.1-201ENST00000603090 165 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 CR382285.1-202ENST00000604687 547 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC002044.1-201ENST00000606707 158 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC006023.2-201ENST00000609916 167 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AL161616.1-201ENST00000611867 286 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC116165.3-201ENST00000614524 400 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC007998.5-201ENST00000622938 237 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 ASB8-218ENST00000629941 278 ntTSL 5 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6.3□□□□□ -1.4
USB1Q9BQ65 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AL031119.1-201ENST00000404707 1879 ntBASIC6.3□□□□□ -1.4
USB1Q9BQ65 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
USB1Q9BQ65 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.29□□□□□ -1.4
USB1Q9BQ65 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
USB1Q9BQ65 AL122126.1-201ENST00000546905 1318 ntBASIC6.29□□□□□ -1.4
USB1Q9BQ65 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
USB1Q9BQ65 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.29□□□□□ -1.4
USB1Q9BQ65 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.29□□□□□ -1.4
USB1Q9BQ65 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
USB1Q9BQ65 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
USB1Q9BQ65 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.29□□□□□ -1.4
USB1Q9BQ65 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 151.2 ms