Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 Y_RNA.39-201ENST00000362620 98 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 RNU4-31P-201ENST00000384211 141 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 RNU6-903P-201ENST00000391270 109 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AL096829.1-201ENST00000413677 457 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 PDSS1P1-201ENST00000422953 1114 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 HSPE1P16-201ENST00000426640 348 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC104837.2-201ENST00000427236 424 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AL451136.1-201ENST00000435399 325 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 RPS3AP54-201ENST00000435535 734 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 RPS3AP38-201ENST00000435889 763 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 RPL7P29-201ENST00000437151 728 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 NEFMP1-201ENST00000443423 1006 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AP000281.1-201ENST00000444036 316 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 NANOGP10-201ENST00000453325 895 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 GEMIN2P1-201ENST00000454246 752 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 SNX18P26-201ENST00000458433 740 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 RPS26P39-201ENST00000469206 341 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 RPL7P49-201ENST00000471402 708 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC022215.1-201ENST00000481770 362 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 RNU6-475P-201ENST00000516073 104 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC027308.1-201ENST00000517993 110 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC087441.2-201ENST00000529141 262 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC025884.1-201ENST00000556034 378 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC233702.7-202ENST00000582941 211 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 MZT1P2-201ENST00000604387 248 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 Z98751.3-201ENST00000604447 521 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC005344.1-201ENST00000613391 459 ntBASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
NPAS3Q8IXF0 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 PABPC1P7-201ENST00000413177 1513 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 OR13C1P-202ENST00000641378 2919 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 Y_RNA.167-201ENST00000363735 109 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 Y_RNA.212-201ENST00000364177 102 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 RNY4P16-201ENST00000364768 94 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 SNORD14.1-201ENST00000365609 90 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 SNORD116-11-201ENST00000383882 92 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 ARL5AP1-201ENST00000418991 388 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 GAPDHP48-201ENST00000436626 961 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AC020550.1-201ENST00000447385 163 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AC092967.1-201ENST00000449016 481 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AL122020.1-201ENST00000472287 459 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AC124945.1-201ENST00000485133 188 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 Y_RNA.670-201ENST00000516255 105 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AC027309.2-201ENST00000520566 192 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 SETP2-201ENST00000553886 926 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 MIR4301-201ENST00000577203 66 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AL136131.3-201ENST00000607600 188 ntBASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NPAS3Q8IXF0 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms