Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SKA3Q8IX90 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SKA3Q8IX90 MIR6875-201ENST00000617506 72 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 AL138955.1-201ENST00000622881 1040 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 AC073530.2-201ENST00000623987 261 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SKA3Q8IX90 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SKA3Q8IX90 UBE3AP2-201ENST00000429033 2259 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SKA3Q8IX90 NSRP1P1-201ENST00000444067 1693 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SKA3Q8IX90 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SKA3Q8IX90 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SKA3Q8IX90 MTCO1P6-201ENST00000481192 1384 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 RNA5SP97-201ENST00000365006 84 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 RNU6-213P-201ENST00000384051 104 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 U1.1-201ENST00000384101 164 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 U6.112-201ENST00000384129 70 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 MIR525-201ENST00000384978 85 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SKA3Q8IX90 EI24P2-201ENST00000397776 1076 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 RNU6-77P-201ENST00000410554 91 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 PTP4A1P5-201ENST00000420305 455 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 RPL21P110-201ENST00000433345 446 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 RPS7P2-201ENST00000435134 607 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC105402.2-201ENST00000438503 358 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC000041.1-201ENST00000439655 175 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 HMGB1P48-201ENST00000446155 598 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 RPS17P13-201ENST00000448974 407 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 OR51B8P-201ENST00000449892 769 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC008280.2-201ENST00000455473 307 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 BX248409.1-201ENST00000455497 255 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC010460.1-201ENST00000507087 466 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC008885.2-201ENST00000509506 930 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 PRELID3BP4-201ENST00000515476 571 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 IGJP1-201ENST00000522682 475 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC104115.2-201ENST00000523026 687 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SKA3Q8IX90 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 AL133457.1-201ENST00000564251 987 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC126365.2-201ENST00000580630 379 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 VN1R88P-201ENST00000596787 292 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC015726.1-201ENST00000602353 681 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 BNIP3P31-201ENST00000604515 566 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 AC068831.8-201ENST00000620171 435 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SKA3Q8IX90 AL590396.4-201ENST00000636779 956 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 MIR7153-201ENST00000637758 57 ntBASIC3.41□□□□□ -1.86
SKA3Q8IX90 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SKA3Q8IX90 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SKA3Q8IX90 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.41□□□□□ -1.86
SKA3Q8IX90 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
SKA3Q8IX90 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
SKA3Q8IX90 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SKA3Q8IX90 RNU6-1293P-201ENST00000384077 107 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 SNORA51.12-201ENST00000384448 134 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SKA3Q8IX90 PRRC2CP1-201ENST00000404428 159 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 RPL37P1-201ENST00000432310 284 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 OR9M1P-201ENST00000459641 921 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 RN7SL330P-201ENST00000469709 307 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC068587.1-201ENST00000483613 781 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AP001086.1-201ENST00000494882 321 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC110792.2-201ENST00000510278 224 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 RPL7L1P13-201ENST00000511702 739 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms