Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CENPUP1-201ENST00000526649 1202 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 AP002453.2-201ENST00000533503 320 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.1□□□□□ -1.59
USP39Q53GS9 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC5.1□□□□□ -1.59
USP39Q53GS9 AC209154.1-201ENST00000582156 337 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC5.1□□□□□ -1.59
USP39Q53GS9 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.1□□□□□ -1.59
USP39Q53GS9 UBE2V2P2-201ENST00000587677 504 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC5.1□□□□□ -1.59
USP39Q53GS9 AC068790.4-201ENST00000602474 263 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 AL512782.1-201ENST00000603093 364 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 AL391358.1-201ENST00000605342 190 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 AC019193.2-201ENST00000610012 634 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 PART1_1.1-201ENST00000611761 217 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.1□□□□□ -1.59
USP39Q53GS9 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USP39Q53GS9 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USP39Q53GS9 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP39Q53GS9 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
USP39Q53GS9 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.1□□□□□ -1.59
USP39Q53GS9 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC5.09□□□□□ -1.59
USP39Q53GS9 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.09□□□□□ -1.59
USP39Q53GS9 NSRP1P1-201ENST00000444067 1693 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
USP39Q53GS9 DCAF13P3-201ENST00000561147 1334 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 RNY4P14-201ENST00000363656 96 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 MIR298-201ENST00000401212 88 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 RNA5SP113-201ENST00000410486 84 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 AC013404.1-201ENST00000413068 249 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.09□□□□□ -1.59
USP39Q53GS9 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC5.09□□□□□ -1.59
USP39Q53GS9 OFD1P18Y-201ENST00000420889 959 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 HMGN2P27-201ENST00000427352 270 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 AL450263.2-201ENST00000439400 589 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 OR1H1P-201ENST00000448731 937 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.09□□□□□ -1.59
USP39Q53GS9 PSPHP1-201ENST00000450062 261 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC5.09□□□□□ -1.59
USP39Q53GS9 AC021660.1-201ENST00000465006 554 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.09□□□□□ -1.59
USP39Q53GS9 RBM43P1-201ENST00000476891 1081 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 AC068587.1-201ENST00000483613 781 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.09□□□□□ -1.59
USP39Q53GS9 PDLIM1P4-201ENST00000504327 1006 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC5.09□□□□□ -1.59
USP39Q53GS9 PTGES3P3-201ENST00000511479 482 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 RNU6-358P-201ENST00000516564 75 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 AC100784.1-201ENST00000522790 310 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC5.09□□□□□ -1.59
USP39Q53GS9 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC5.09□□□□□ -1.59
USP39Q53GS9 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.09□□□□□ -1.59
USP39Q53GS9 AC123904.3-201ENST00000547218 814 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC5.09□□□□□ -1.59
USP39Q53GS9 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.09□□□□□ -1.59
USP39Q53GS9 PCMTD1P2-201ENST00000565017 355 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 AC022884.2-201ENST00000578535 580 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.09□□□□□ -1.59
USP39Q53GS9 VN1R79P-201ENST00000593540 513 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 BNIP3P4-201ENST00000604946 565 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.09□□□□□ -1.59
USP39Q53GS9 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.09□□□□□ -1.59
USP39Q53GS9 AL158209.2-201ENST00000619266 216 ntBASIC5.09□□□□□ -1.59
USP39Q53GS9 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP39Q53GS9 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
USP39Q53GS9 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.09□□□□□ -1.6
USP39Q53GS9 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.6
USP39Q53GS9 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 AC073136.1-201ENST00000449426 2884 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 RNU6-501P-201ENST00000364072 100 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 Y_RNA.372-201ENST00000365599 102 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 GLULP6-201ENST00000399502 913 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 RPS3AP23-201ENST00000401762 784 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AL356057.2-201ENST00000403318 432 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 FCF1P10-201ENST00000407590 479 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms