Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL050321.1-201ENST00000432363 400 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 MTCO2P20-201ENST00000437339 673 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 RPL7L1P1-201ENST00000448259 785 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 MTND1P31-201ENST00000449206 961 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC041039.1-201ENST00000485656 536 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 HMGB1P21-201ENST00000502313 581 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 WBP1LP4-201ENST00000505043 344 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC108475.1-201ENST00000507880 950 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 NPM1P41-201ENST00000512920 831 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 OR5BC1P-201ENST00000529327 739 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 FKBP1BP1-201ENST00000553366 325 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AL132657.2-201ENST00000564417 358 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC009094.1-201ENST00000564443 426 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC133552.5-201ENST00000604266 540 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC009220.3-201ENST00000604318 586 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AP003392.5-201ENST00000607857 415 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC015813.4-201ENST00000610469 179 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC007546.1-201ENST00000619452 559 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC039056.2-201ENST00000622261 511 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 MIR4278-201ENST00000636094 69 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 MTND5P28-201ENST00000438005 1594 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 SLC10A5P1-201ENST00000379063 1306 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 RNU5D-1-201ENST00000363299 116 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 RNU6-1214P-201ENST00000363650 109 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 RNA5SP513-201ENST00000364648 118 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 MIR506-201ENST00000384998 124 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 MIR634-201ENST00000385208 97 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AF228730.1-201ENST00000397972 663 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 ARL4AP5-201ENST00000404372 599 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AL161449.1-201ENST00000414531 1199 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC093578.1-201ENST00000415219 368 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC018644.1-201ENST00000429934 551 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC005345.1-201ENST00000431868 217 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 RPS29P7-201ENST00000439662 171 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 FGF7P3-201ENST00000454645 303 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AL133477.1-201ENST00000457472 514 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 MTATP6P22-201ENST00000507369 598 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC090071.1-201ENST00000507713 644 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC110792.2-201ENST00000510278 224 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC109445.1-201ENST00000512356 383 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC018797.3-201ENST00000513388 1241 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 RNU6-1261P-201ENST00000517194 104 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 UBTFL10-201ENST00000528532 562 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AP000790.1-201ENST00000528891 737 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC090888.2-201ENST00000559765 1144 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AL354943.1-201ENST00000572103 781 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 OR4K7P-201ENST00000580232 945 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 MIR3200-201ENST00000580767 85 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC022146.1-201ENST00000595307 847 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 VN1R92P-201ENST00000598511 928 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 DPRXP5-201ENST00000604662 539 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AF001550.2-201ENST00000636643 217 ntBASIC4.32□□□□□ -1.72
COL28A1Q2UY09 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms