Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.52□□□□□ -1.85
COL4A4P53420 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL4A4P53420 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.52□□□□□ -1.85
COL4A4P53420 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC3.51□□□□□ -1.85
COL4A4P53420 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL4A4P53420 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
COL4A4P53420 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL4A4P53420 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.51□□□□□ -1.85
COL4A4P53420 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL4A4P53420 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL4A4P53420 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.51□□□□□ -1.85
COL4A4P53420 EEF1A1P41-201ENST00000414667 207 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.51□□□□□ -1.85
COL4A4P53420 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.51□□□□□ -1.85
COL4A4P53420 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC3.51□□□□□ -1.85
COL4A4P53420 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC3.51□□□□□ -1.85
COL4A4P53420 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.51□□□□□ -1.85
COL4A4P53420 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 AC068724.1-201ENST00000487100 792 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 COL6A4P2-205ENST00000509855 506 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL4A4P53420 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC3.51□□□□□ -1.85
COL4A4P53420 AC026407.1-201ENST00000518369 204 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL4A4P53420 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC3.51□□□□□ -1.85
COL4A4P53420 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.51□□□□□ -1.85
COL4A4P53420 AC115989.2-201ENST00000578640 563 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 AC015911.5-201ENST00000587076 451 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.51□□□□□ -1.85
COL4A4P53420 BNIP3P40-201ENST00000596017 556 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 RPL12P50-201ENST00000603116 116 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 AC006557.5-201ENST00000603126 811 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 AC022960.3-201ENST00000619794 441 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.51□□□□□ -1.85
COL4A4P53420 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL4A4P53420 AL445523.1-201ENST00000451184 1362 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL4A4P53420 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.51□□□□□ -1.85
COL4A4P53420 AC007390.2-201ENST00000606229 3803 ntBASIC3.51□□□□□ -1.85
COL4A4P53420 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.51□□□□□ -1.85
COL4A4P53420 AC017071.1-201ENST00000564407 2204 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.5□□□□□ -1.85
COL4A4P53420 AC083799.1-201ENST00000366451 910 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 ARF4P3-201ENST00000397387 509 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 HMGB3P18-201ENST00000406327 590 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 RNU6-55P-201ENST00000411092 107 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 RNU6-954P-201ENST00000411355 107 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.5□□□□□ -1.85
COL4A4P53420 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.5□□□□□ -1.85
COL4A4P53420 RPS3AP43-201ENST00000479743 781 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.5□□□□□ -1.85
COL4A4P53420 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.5□□□□□ -1.85
COL4A4P53420 AP000859.1-201ENST00000525536 307 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.5□□□□□ -1.85
COL4A4P53420 MTND4LP25-201ENST00000570218 163 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 MIR3162-201ENST00000581818 82 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.5□□□□□ -1.85
COL4A4P53420 AC005242.1-201ENST00000585658 438 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.5□□□□□ -1.85
COL4A4P53420 BNIP3P27-201ENST00000599991 412 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.5□□□□□ -1.85
COL4A4P53420 AL162713.1-201ENST00000604480 262 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 AL158050.2-201ENST00000605336 568 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 AC100793.4-201ENST00000613683 429 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 AL590240.3-201ENST00000621416 943 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 AC090772.4-201ENST00000623599 362 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 AC106858.1-201ENST00000637497 429 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.5□□□□□ -1.85
COL4A4P53420 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL4A4P53420 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC3.5□□□□□ -1.85
COL4A4P53420 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL4A4P53420 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
COL4A4P53420 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL4A4P53420 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
COL4A4P53420 AC244453.4-201ENST00000419150 388 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 SAGE4P-201ENST00000442271 3381 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 MTATP6P26-201ENST00000445926 662 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 OR7L1P-201ENST00000456181 380 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 AC108729.1-201ENST00000487812 947 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 VN1R104P-201ENST00000505115 1009 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL4A4P53420 AC067805.1-201ENST00000559344 470 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC3.49□□□□□ -1.85
COL4A4P53420 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A4P53420 AL157817.1-201ENST00000614264 790 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 AC022079.1-201ENST00000621546 602 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
COL4A4P53420 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL4A4P53420 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL4A4P53420 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A4P53420 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A4P53420 AC108206.1-201ENST00000570186 4159 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
COL4A4P53420 AL031985.3-201ENST00000565390 2449 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL4A4P53420 OR5H2-201ENST00000355273 945 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
COL4A4P53420 SNORA72.3-201ENST00000365074 132 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 RNU6-1176P-201ENST00000390955 107 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms