Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RN7SL691P-201ENST00000494487 301 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 FTH1P24-201ENST00000503502 462 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 AC083829.1-201ENST00000503756 657 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.47□□□□□ -1.69
PTPN9P43378 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC4.47□□□□□ -1.69
PTPN9P43378 RNU6-202P-201ENST00000515998 96 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.47□□□□□ -1.69
PTPN9P43378 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC4.47□□□□□ -1.69
PTPN9P43378 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.47□□□□□ -1.69
PTPN9P43378 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.47□□□□□ -1.69
PTPN9P43378 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.47□□□□□ -1.69
PTPN9P43378 AL031281.1-201ENST00000604049 488 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 FAM27D1-201ENST00000612308 341 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 AL121873.1-201ENST00000616013 524 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.47□□□□□ -1.69
PTPN9P43378 AL445363.3-201ENST00000623080 671 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 AC009039.2-201ENST00000624524 529 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.47□□□□□ -1.69
PTPN9P43378 AC008013.2-202ENST00000637965 364 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.47□□□□□ -1.69
PTPN9P43378 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
PTPN9P43378 MTND5P31-201ENST00000419366 1374 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
PTPN9P43378 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.47□□□□□ -1.69
PTPN9P43378 SGO1P2-201ENST00000429458 1589 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PTPN9P43378 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
PTPN9P43378 AC107982.1-201ENST00000507171 1300 ntBASIC4.46□□□□□ -1.69
PTPN9P43378 CYP1D1P-201ENST00000416662 1433 ntBASIC4.46□□□□□ -1.69
PTPN9P43378 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.46□□□□□ -1.69
PTPN9P43378 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.46□□□□□ -1.69
PTPN9P43378 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
PTPN9P43378 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.46□□□□□ -1.69
PTPN9P43378 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
PTPN9P43378 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
PTPN9P43378 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.69
PTPN9P43378 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
PTPN9P43378 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.46□□□□□ -1.69
PTPN9P43378 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.46□□□□□ -1.7
PTPN9P43378 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
PTPN9P43378 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
PTPN9P43378 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
PTPN9P43378 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PTPN9P43378 AC012321.1-201ENST00000561622 1588 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
PTPN9P43378 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.46□□□□□ -1.7
PTPN9P43378 RNU6-931P-201ENST00000363850 107 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 RNU1-32P-201ENST00000363937 159 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
PTPN9P43378 LAP3P1-201ENST00000403648 294 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 RPL23AP48-201ENST00000406913 488 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 RPL23AP47-201ENST00000408017 460 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 RNU2-42P-201ENST00000410697 113 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 RNU4-72P-201ENST00000410754 173 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 P2RY10P2-201ENST00000416730 913 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 AL161631.1-201ENST00000417933 486 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.46□□□□□ -1.7
PTPN9P43378 AC009480.2-201ENST00000422916 432 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 AL365203.2-201ENST00000423444 196 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 AL365396.1-201ENST00000430854 671 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 MTCYBP34-201ENST00000439552 670 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 CBX1P1-201ENST00000440184 427 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.46□□□□□ -1.7
PTPN9P43378 AL133217.1-201ENST00000450980 425 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 AL109741.2-201ENST00000455561 343 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 AC011276.1-201ENST00000469688 323 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 AC006463.2-201ENST00000473326 348 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 PPBPP1-201ENST00000510807 373 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 Y_RNA.688-201ENST00000516565 95 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.46□□□□□ -1.7
PTPN9P43378 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.46□□□□□ -1.7
PTPN9P43378 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.46□□□□□ -1.7
PTPN9P43378 AC008015.1-201ENST00000555505 465 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.46□□□□□ -1.7
PTPN9P43378 MIR4512-201ENST00000583257 77 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.46□□□□□ -1.7
PTPN9P43378 AC131235.4-201ENST00000609288 620 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 VIS1.1-201ENST00000610517 203 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.46□□□□□ -1.7
PTPN9P43378 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.46□□□□□ -1.7
PTPN9P43378 AC069209.1-201ENST00000619282 651 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
PTPN9P43378 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
PTPN9P43378 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
PTPN9P43378 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PTPN9P43378 AL158163.1-201ENST00000603915 1649 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.46□□□□□ -1.7
PTPN9P43378 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.46□□□□□ -1.7
PTPN9P43378 ZNF736P9Y-201ENST00000439586 1345 ntBASIC4.46□□□□□ -1.7
PTPN9P43378 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN9P43378 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN9P43378 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN9P43378 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN9P43378 CDR1-202ENST00000625883 1485 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN9P43378 MTND4P34-201ENST00000572715 1371 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AC016716.1-201ENST00000265882 708 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 FAM3C2-201ENST00000312214 681 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms