Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CUX1P39880 AC019072.1-201ENST00000604535 1551 ntBASIC5.02□□□□□ -1.61
CUX1P39880 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
CUX1P39880 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC5.02□□□□□ -1.61
CUX1P39880 MIR34A-201ENST00000385130 110 ntBASIC5.02□□□□□ -1.61
CUX1P39880 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
CUX1P39880 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
CUX1P39880 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC5.02□□□□□ -1.61
CUX1P39880 AL445528.1-201ENST00000426330 420 ntBASIC5.02□□□□□ -1.61
CUX1P39880 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC5.02□□□□□ -1.61
CUX1P39880 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC5.02□□□□□ -1.61
CUX1P39880 RPS3P1-201ENST00000456781 192 ntBASIC5.02□□□□□ -1.61
CUX1P39880 RN7SL20P-201ENST00000488827 297 ntBASIC5.02□□□□□ -1.61
CUX1P39880 AC091544.4-201ENST00000555268 342 ntBASIC5.02□□□□□ -1.61
CUX1P39880 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC5.02□□□□□ -1.61
CUX1P39880 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC5.02□□□□□ -1.61
CUX1P39880 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CUX1P39880 RPS4XP5-202ENST00000449995 1334 ntBASIC5.01□□□□□ -1.61
CUX1P39880 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CUX1P39880 ASNSP1-201ENST00000518311 1939 ntBASIC5.01□□□□□ -1.61
CUX1P39880 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CUX1P39880 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CUX1P39880 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CUX1P39880 ANKRD36BP1-201ENST00000358576 1779 ntBASIC5.01□□□□□ -1.61
CUX1P39880 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
CUX1P39880 OR56A5-201ENST00000340110 738 ntBASIC5.01□□□□□ -1.61
CUX1P39880 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
CUX1P39880 GLRXP1-201ENST00000423261 334 ntBASIC5.01□□□□□ -1.61
CUX1P39880 NPM1P24-201ENST00000428039 894 ntBASIC5.01□□□□□ -1.61
CUX1P39880 AC128713.1-201ENST00000471495 306 ntBASIC5.01□□□□□ -1.61
CUX1P39880 RNU4-29P-201ENST00000515943 174 ntBASIC5.01□□□□□ -1.61
CUX1P39880 IGHVIII-44-202ENST00000636235 289 ntBASIC5.01□□□□□ -1.61
CUX1P39880 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC5.01□□□□□ -1.61
CUX1P39880 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
CUX1P39880 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CUX1P39880 RNU6-55P-201ENST00000411092 107 ntBASIC5□□□□□ -1.61
CUX1P39880 RNU6-954P-201ENST00000411355 107 ntBASIC5□□□□□ -1.61
CUX1P39880 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC5□□□□□ -1.61
CUX1P39880 BX276092.4-201ENST00000452056 248 ntBASIC5□□□□□ -1.61
CUX1P39880 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC5□□□□□ -1.61
CUX1P39880 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5□□□□□ -1.61
CUX1P39880 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC5□□□□□ -1.61
CUX1P39880 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC5□□□□□ -1.61
CUX1P39880 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5□□□□□ -1.61
CUX1P39880 AL049874.4-201ENST00000557593 255 ntBASIC5□□□□□ -1.61
CUX1P39880 EIF5A2P1-201ENST00000564027 460 ntBASIC5□□□□□ -1.61
CUX1P39880 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC5□□□□□ -1.61
CUX1P39880 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC5□□□□□ -1.61
CUX1P39880 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CUX1P39880 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
CUX1P39880 SNORA9.2-201ENST00000365361 133 ntBASIC4.99□□□□□ -1.61
CUX1P39880 BTF3P9-201ENST00000418784 283 ntBASIC4.99□□□□□ -1.61
CUX1P39880 Z93242.1-201ENST00000427102 353 ntBASIC4.99□□□□□ -1.61
CUX1P39880 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.99□□□□□ -1.61
CUX1P39880 AL035407.1-201ENST00000429211 571 ntBASIC4.99□□□□□ -1.61
CUX1P39880 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CUX1P39880 SETP12-201ENST00000514068 805 ntBASIC4.99□□□□□ -1.61
CUX1P39880 AP001207.2-201ENST00000519490 539 ntBASIC4.99□□□□□ -1.61
CUX1P39880 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CUX1P39880 MIR5047-201ENST00000579212 100 ntBASIC4.99□□□□□ -1.61
CUX1P39880 AC007566.2-201ENST00000603642 413 ntBASIC4.99□□□□□ -1.61
CUX1P39880 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
CUX1P39880 AC007318.2-201ENST00000620999 243 ntBASIC4.99□□□□□ -1.61
CUX1P39880 PLCE1P1-201ENST00000622094 305 ntBASIC4.99□□□□□ -1.61
CUX1P39880 AC243829.7-201ENST00000633081 225 ntBASIC4.99□□□□□ -1.61
CUX1P39880 AC104446.1-201ENST00000613728 1321 ntBASIC4.99□□□□□ -1.61
CUX1P39880 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.98□□□□□ -1.61
CUX1P39880 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.98□□□□□ -1.61
CUX1P39880 MIR1261-201ENST00000408659 82 ntBASIC4.98□□□□□ -1.61
CUX1P39880 RN7SKP272-201ENST00000516988 232 ntBASIC4.98□□□□□ -1.61
CUX1P39880 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.98□□□□□ -1.61
CUX1P39880 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.98□□□□□ -1.61
CUX1P39880 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.98□□□□□ -1.61
CUX1P39880 AC138761.3-201ENST00000579993 334 ntBASIC4.98□□□□□ -1.61
CUX1P39880 RMST_9.1-201ENST00000619945 193 ntBASIC4.98□□□□□ -1.61
CUX1P39880 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
CUX1P39880 BMS1P22-201ENST00000414726 313 ntBASIC4.97□□□□□ -1.61
CUX1P39880 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.97□□□□□ -1.61
CUX1P39880 RPL7P36-201ENST00000444633 681 ntBASIC4.97□□□□□ -1.61
CUX1P39880 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC4.97□□□□□ -1.61
CUX1P39880 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.97□□□□□ -1.61
CUX1P39880 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.97□□□□□ -1.61
CUX1P39880 AC023389.2-201ENST00000580031 955 ntBASIC4.97□□□□□ -1.61
CUX1P39880 OR6R2P-201ENST00000609216 300 ntBASIC4.97□□□□□ -1.61
CUX1P39880 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC4.97□□□□□ -1.61
CUX1P39880 AL049780.3-201ENST00000624612 1583 ntBASIC4.97□□□□□ -1.61
CUX1P39880 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.97□□□□□ -1.61
CUX1P39880 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.97□□□□□ -1.61
CUX1P39880 AC027287.1-201ENST00000553115 1453 ntBASIC4.97□□□□□ -1.61
CUX1P39880 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CUX1P39880 HSPA8P1-201ENST00000425843 1833 ntBASIC4.97□□□□□ -1.61
CUX1P39880 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CUX1P39880 AC138393.1-206ENST00000540997 1886 ntBASIC4.97□□□□□ -1.61
CUX1P39880 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CUX1P39880 SNORA67.4-201ENST00000384688 142 ntBASIC4.97□□□□□ -1.61
CUX1P39880 AL139413.1-201ENST00000421309 217 ntBASIC4.97□□□□□ -1.61
CUX1P39880 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC4.97□□□□□ -1.61
CUX1P39880 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.97□□□□□ -1.61
CUX1P39880 NIPA2P5-201ENST00000452282 464 ntBASIC4.97□□□□□ -1.61
CUX1P39880 RPL31P13-201ENST00000484151 370 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 146.4 ms