Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.91□□□□□ -1.78
BRCA1P38398 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.91□□□□□ -1.78
BRCA1P38398 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.91□□□□□ -1.78
BRCA1P38398 CYCSP41-201ENST00000616920 296 ntBASIC3.91□□□□□ -1.78
BRCA1P38398 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.91□□□□□ -1.78
BRCA1P38398 AC010149.2-201ENST00000637608 315 ntBASIC3.91□□□□□ -1.78
BRCA1P38398 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
BRCA1P38398 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
BRCA1P38398 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
BRCA1P38398 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.78
BRCA1P38398 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.9□□□□□ -1.78
BRCA1P38398 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
BRCA1P38398 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC3.9□□□□□ -1.78
BRCA1P38398 AC006989.1-201ENST00000427212 131 ntBASIC3.9□□□□□ -1.78
BRCA1P38398 BX276092.4-201ENST00000452056 248 ntBASIC3.9□□□□□ -1.78
BRCA1P38398 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC3.9□□□□□ -1.78
BRCA1P38398 HNRNPKP5-201ENST00000515300 253 ntBASIC3.9□□□□□ -1.78
BRCA1P38398 RNA5SP367-201ENST00000516557 118 ntBASIC3.9□□□□□ -1.78
BRCA1P38398 SCARNA20.6-201ENST00000517251 106 ntBASIC3.9□□□□□ -1.78
BRCA1P38398 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.9□□□□□ -1.78
BRCA1P38398 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC3.9□□□□□ -1.78
BRCA1P38398 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.9□□□□□ -1.78
BRCA1P38398 AC007619.2-201ENST00000605743 379 ntBASIC3.9□□□□□ -1.78
BRCA1P38398 MIR486-1-201ENST00000612171 68 ntBASIC3.9□□□□□ -1.78
BRCA1P38398 AC096644.4-201ENST00000563417 2912 ntBASIC3.9□□□□□ -1.78
BRCA1P38398 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
BRCA1P38398 AC021755.1-201ENST00000559747 1447 ntBASIC3.9□□□□□ -1.79
BRCA1P38398 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
BRCA1P38398 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
BRCA1P38398 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.9□□□□□ -1.79
BRCA1P38398 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
BRCA1P38398 AC012065.2-201ENST00000421295 375 ntBASIC3.9□□□□□ -1.79
BRCA1P38398 AL139413.1-201ENST00000421309 217 ntBASIC3.9□□□□□ -1.79
BRCA1P38398 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.9□□□□□ -1.79
BRCA1P38398 HSPE1P22-201ENST00000456856 327 ntBASIC3.9□□□□□ -1.79
BRCA1P38398 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
BRCA1P38398 YWHAEP4-201ENST00000505390 198 ntBASIC3.9□□□□□ -1.79
BRCA1P38398 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.9□□□□□ -1.79
BRCA1P38398 RFPL4AP5-201ENST00000514977 504 ntBASIC3.9□□□□□ -1.79
BRCA1P38398 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
BRCA1P38398 AP002404.1-201ENST00000532005 451 ntBASIC3.9□□□□□ -1.79
BRCA1P38398 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.9□□□□□ -1.79
BRCA1P38398 AC091544.4-201ENST00000555268 342 ntBASIC3.9□□□□□ -1.79
BRCA1P38398 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC3.9□□□□□ -1.79
BRCA1P38398 AC004832.5-201ENST00000608677 401 ntBASIC3.9□□□□□ -1.79
BRCA1P38398 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC3.9□□□□□ -1.79
BRCA1P38398 AC108206.1-201ENST00000570186 4159 ntBASIC3.9□□□□□ -1.79
BRCA1P38398 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.9□□□□□ -1.79
BRCA1P38398 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
BRCA1P38398 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.89□□□□□ -1.79
BRCA1P38398 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
BRCA1P38398 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
BRCA1P38398 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
BRCA1P38398 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
BRCA1P38398 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
BRCA1P38398 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.89□□□□□ -1.79
BRCA1P38398 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC3.89□□□□□ -1.79
BRCA1P38398 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.89□□□□□ -1.79
BRCA1P38398 AC073069.1-201ENST00000428657 441 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 AL035407.1-201ENST00000429211 571 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.89□□□□□ -1.79
BRCA1P38398 AC108938.1-201ENST00000451204 136 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC3.89□□□□□ -1.79
BRCA1P38398 HMGN1P8-201ENST00000463578 288 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 AC087312.1-201ENST00000471411 480 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 HMGB3P14-201ENST00000494195 599 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.89□□□□□ -1.79
BRCA1P38398 COX6CP8-201ENST00000522620 226 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
BRCA1P38398 OR8X1P-201ENST00000534542 869 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.89□□□□□ -1.79
BRCA1P38398 BNIP3P10-201ENST00000605360 577 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 AC034236.3-201ENST00000605999 461 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 RMST_9.1-201ENST00000619945 193 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 AC073073.2-201ENST00000609827 2578 ntBASIC3.89□□□□□ -1.79
BRCA1P38398 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
BRCA1P38398 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
BRCA1P38398 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
BRCA1P38398 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.88□□□□□ -1.79
BRCA1P38398 RNA5SP322-201ENST00000363617 119 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 RNU6-225P-201ENST00000384613 103 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 AL512430.2-201ENST00000406786 339 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.88□□□□□ -1.79
BRCA1P38398 NPM1P13-201ENST00000452663 865 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.88□□□□□ -1.79
BRCA1P38398 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC3.88□□□□□ -1.79
BRCA1P38398 H3F3AP1-201ENST00000559984 334 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 GMCL1P2-201ENST00000605230 823 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 AC015849.2-201ENST00000605738 409 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
BRCA1P38398 BX005019.1-201ENST00000561881 1810 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 AC017071.1-201ENST00000564407 2204 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 AC110792.3-201ENST00000595906 1614 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
BRCA1P38398 MTCO1P8-201ENST00000416914 1523 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.88□□□□□ -1.79
BRCA1P38398 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.88□□□□□ -1.79
BRCA1P38398 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms