Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC121247.2-201ENST00000604776 136 ntBASIC4.72□□□□□ -1.65
CIITAP33076 AL591034.3-201ENST00000605511 685 ntBASIC4.72□□□□□ -1.65
CIITAP33076 AC105227.2-201ENST00000615075 605 ntBASIC4.72□□□□□ -1.65
CIITAP33076 AL157770.1-201ENST00000623049 439 ntBASIC4.72□□□□□ -1.65
CIITAP33076 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CIITAP33076 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CIITAP33076 AC017104.4-201ENST00000636283 1592 ntBASIC4.72□□□□□ -1.65
CIITAP33076 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CIITAP33076 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CIITAP33076 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
CIITAP33076 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.72□□□□□ -1.65
CIITAP33076 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CIITAP33076 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CIITAP33076 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CIITAP33076 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
CIITAP33076 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CIITAP33076 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
CIITAP33076 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CIITAP33076 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CIITAP33076 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC4.71□□□□□ -1.66
CIITAP33076 AL022722.2-201ENST00000402519 180 ntBASIC4.71□□□□□ -1.66
CIITAP33076 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CIITAP33076 MIR1303-201ENST00000408625 86 ntBASIC4.71□□□□□ -1.66
CIITAP33076 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.71□□□□□ -1.66
CIITAP33076 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC4.71□□□□□ -1.66
CIITAP33076 AL356095.1-201ENST00000417217 199 ntBASIC4.71□□□□□ -1.66
CIITAP33076 MORF4L1P6-201ENST00000418771 268 ntBASIC4.71□□□□□ -1.66
CIITAP33076 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.71□□□□□ -1.66
CIITAP33076 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.71□□□□□ -1.66
CIITAP33076 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.71□□□□□ -1.66
CIITAP33076 AC004975.1-201ENST00000428733 208 ntBASIC4.71□□□□□ -1.66
CIITAP33076 AL390023.1-201ENST00000428836 262 ntBASIC4.71□□□□□ -1.66
CIITAP33076 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.71□□□□□ -1.66
CIITAP33076 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC4.71□□□□□ -1.66
CIITAP33076 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
CIITAP33076 KATNBL1P3-201ENST00000443475 909 ntBASIC4.71□□□□□ -1.66
CIITAP33076 AC079776.3-201ENST00000450665 370 ntBASIC4.71□□□□□ -1.66
CIITAP33076 RAD23BP3-201ENST00000454157 1152 ntBASIC4.71□□□□□ -1.66
CIITAP33076 AF213884.1-201ENST00000488102 463 ntBASIC4.71□□□□□ -1.66
CIITAP33076 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC4.71□□□□□ -1.66
CIITAP33076 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CIITAP33076 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.71□□□□□ -1.66
CIITAP33076 AC008837.2-201ENST00000513076 418 ntBASIC4.71□□□□□ -1.66
CIITAP33076 NDUFB4P12-201ENST00000513465 390 ntBASIC4.71□□□□□ -1.66
CIITAP33076 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.71□□□□□ -1.66
CIITAP33076 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.71□□□□□ -1.66
CIITAP33076 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.71□□□□□ -1.66
CIITAP33076 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC4.71□□□□□ -1.66
CIITAP33076 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.71□□□□□ -1.66
CIITAP33076 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.71□□□□□ -1.66
CIITAP33076 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.71□□□□□ -1.66
CIITAP33076 DUXAP1-201ENST00000556632 463 ntBASIC4.71□□□□□ -1.66
CIITAP33076 AC087465.1-201ENST00000560574 245 ntBASIC4.71□□□□□ -1.66
CIITAP33076 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.71□□□□□ -1.66
CIITAP33076 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.71□□□□□ -1.66
CIITAP33076 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.71□□□□□ -1.66
CIITAP33076 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC4.71□□□□□ -1.66
CIITAP33076 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.71□□□□□ -1.66
CIITAP33076 MIR432-201ENST00000606207 94 ntBASIC4.71□□□□□ -1.66
CIITAP33076 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.71□□□□□ -1.66
CIITAP33076 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.71□□□□□ -1.66
CIITAP33076 ATE1-AS1-202ENST00000636460 506 ntBASIC4.71□□□□□ -1.66
CIITAP33076 AC087821.2-201ENST00000637086 450 ntBASIC4.71□□□□□ -1.66
CIITAP33076 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CIITAP33076 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CIITAP33076 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CIITAP33076 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CIITAP33076 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.71□□□□□ -1.66
CIITAP33076 ERCC6-202ENST00000374127 1782 ntBASIC4.7□□□□□ -1.66
CIITAP33076 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.7□□□□□ -1.66
CIITAP33076 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
CIITAP33076 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.7□□□□□ -1.66
CIITAP33076 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CIITAP33076 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CIITAP33076 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AC116667.1-201ENST00000604855 2072 ntBASIC4.7□□□□□ -1.66
CIITAP33076 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
CIITAP33076 ENSAP1-201ENST00000392855 326 ntBASIC4.7□□□□□ -1.66
CIITAP33076 SNORA11C-201ENST00000408532 129 ntBASIC4.7□□□□□ -1.66
CIITAP33076 RNA5SP146-201ENST00000410743 123 ntBASIC4.7□□□□□ -1.66
CIITAP33076 TEX41-202ENST00000414256 604 ntTSL 5 BASIC4.7□□□□□ -1.66
CIITAP33076 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC4.7□□□□□ -1.66
CIITAP33076 IPMKP1-201ENST00000425988 855 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AL593851.1-201ENST00000426171 157 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AL009174.1-201ENST00000426577 416 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AC005345.1-201ENST00000431868 217 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.7□□□□□ -1.66
CIITAP33076 AC023347.2-201ENST00000433994 462 ntBASIC4.7□□□□□ -1.66
CIITAP33076 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.7□□□□□ -1.66
CIITAP33076 AC006011.1-201ENST00000442758 349 ntBASIC4.7□□□□□ -1.66
CIITAP33076 MTND5P2-201ENST00000442927 1142 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.7□□□□□ -1.66
CIITAP33076 AC073387.1-201ENST00000453261 709 ntBASIC4.7□□□□□ -1.66
CIITAP33076 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.7□□□□□ -1.66
CIITAP33076 RPS7P7-201ENST00000463499 571 ntBASIC4.7□□□□□ -1.66
CIITAP33076 RPS26P28-201ENST00000470806 348 ntBASIC4.7□□□□□ -1.66
CIITAP33076 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.7□□□□□ -1.66
CIITAP33076 RN7SL604P-201ENST00000492589 296 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AL035404.1-201ENST00000497982 568 ntBASIC4.7□□□□□ -1.66
CIITAP33076 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms