Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 SMG1P4-204ENST00000523028 4131 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXD3P31249 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXD3P31249 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXD3P31249 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HOXD3P31249 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
HOXD3P31249 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 SNORA2.3-201ENST00000383920 135 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 RNU6-1293P-201ENST00000384077 107 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 RNU6-1042P-201ENST00000384204 107 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HOXD3P31249 U8.14-201ENST00000390843 143 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 SNORA40.3-201ENST00000390964 122 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 OR6C69P-201ENST00000394268 893 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 ARF4P3-201ENST00000397387 509 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 DHFRP6-201ENST00000401776 268 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 RNU6ATAC25P-201ENST00000408798 117 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 RN7SKP56-201ENST00000410513 331 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 HMGB3P23-201ENST00000414981 585 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 RPL21P32-201ENST00000419877 477 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXD3P31249 USP9YP9-201ENST00000429406 715 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 RPL37P21-201ENST00000435890 276 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 MTND1P1-201ENST00000445453 368 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXD3P31249 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 MTCO1P27-201ENST00000448269 226 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.91□□□□□ -1.78
HOXD3P31249 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 RNU7-136P-201ENST00000458819 69 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AP000942.1-201ENST00000463969 747 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AC017015.1-201ENST00000477387 286 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXD3P31249 RN7SL244P-201ENST00000493405 297 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 COX6B1P5-201ENST00000509843 249 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 AC011352.1-201ENST00000512300 793 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 RAB9BP1-201ENST00000519581 626 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AC021006.3-201ENST00000530771 192 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXD3P31249 AC008033.2-201ENST00000542626 177 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC3.91□□□□□ -1.78
HOXD3P31249 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXD3P31249 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXD3P31249 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 AC009117.1-201ENST00000563948 554 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 MIR3913-1-201ENST00000577744 102 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 MIR5697-201ENST00000578045 78 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AC022884.2-201ENST00000578535 580 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 MIR544B-201ENST00000582372 78 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 MAGOH2P-202ENST00000584384 429 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AC110743.1-201ENST00000584870 478 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.91□□□□□ -1.78
HOXD3P31249 PRELID3BP8-201ENST00000604148 295 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AL008729.2-201ENST00000606393 473 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AC007684.1-201ENST00000609671 477 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 AL161616.1-201ENST00000611867 286 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AC026368.1-201ENST00000614934 690 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 U6atac.1-201ENST00000616025 117 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 RNU6-156P-201ENST00000621869 107 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 BMS1P21-201ENST00000634565 365 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 CRYM-AS1-204ENST00000637983 556 ntBASIC3.91□□□□□ -1.78
HOXD3P31249 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXD3P31249 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXD3P31249 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HOXD3P31249 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.9□□□□□ -1.78
HOXD3P31249 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
HOXD3P31249 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
HOXD3P31249 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC3.9□□□□□ -1.78
HOXD3P31249 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC3.9□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms