Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL049545.1-201ENST00000401856 572 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.09□□□□□ -1.75
MSH3P20585 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.09□□□□□ -1.75
MSH3P20585 RAC1P3-201ENST00000416129 580 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC4.09□□□□□ -1.75
MSH3P20585 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC4.09□□□□□ -1.75
MSH3P20585 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.09□□□□□ -1.75
MSH3P20585 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.09□□□□□ -1.75
MSH3P20585 RPS6P12-201ENST00000432491 726 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.09□□□□□ -1.75
MSH3P20585 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC4.09□□□□□ -1.75
MSH3P20585 GTF2IP7-202ENST00000436677 309 ntBASIC4.09□□□□□ -1.75
MSH3P20585 UBE2V1P5-201ENST00000440070 405 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC006011.1-201ENST00000442758 349 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.09□□□□□ -1.75
MSH3P20585 RPL38P1-201ENST00000460914 211 ntBASIC4.09□□□□□ -1.75
MSH3P20585 RPL7P1-201ENST00000468161 747 ntBASIC4.09□□□□□ -1.75
MSH3P20585 RPL7P9-201ENST00000468715 747 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.09□□□□□ -1.75
MSH3P20585 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
MSH3P20585 MTND6P6-201ENST00000478031 263 ntBASIC4.09□□□□□ -1.75
MSH3P20585 GAPDHP39-201ENST00000481866 979 ntBASIC4.09□□□□□ -1.75
MSH3P20585 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.09□□□□□ -1.75
MSH3P20585 RPL29P14-201ENST00000495837 428 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.09□□□□□ -1.75
MSH3P20585 AC093534.1-201ENST00000504977 132 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC034244.1-201ENST00000507687 207 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.09□□□□□ -1.75
MSH3P20585 AC005351.1-201ENST00000511152 786 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC4.09□□□□□ -1.75
MSH3P20585 COX6B1P6-201ENST00000522347 255 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC092747.2-201ENST00000545069 983 ntBASIC4.09□□□□□ -1.75
MSH3P20585 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.09□□□□□ -1.75
MSH3P20585 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.09□□□□□ -1.75
MSH3P20585 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.09□□□□□ -1.75
MSH3P20585 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC4.09□□□□□ -1.75
MSH3P20585 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.09□□□□□ -1.75
MSH3P20585 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.09□□□□□ -1.75
MSH3P20585 VN1R84P-201ENST00000593697 235 ntBASIC4.09□□□□□ -1.75
MSH3P20585 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.09□□□□□ -1.75
MSH3P20585 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC4.09□□□□□ -1.75
MSH3P20585 NTAN1P1-201ENST00000603150 646 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AL451044.1-201ENST00000604867 238 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AL590392.1-201ENST00000604960 446 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC097065.2-201ENST00000608159 533 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC090246.1-201ENST00000616499 426 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC010608.2-201ENST00000624830 470 ntBASIC4.09□□□□□ -1.75
MSH3P20585 CR392039.4-201ENST00000624968 501 ntBASIC4.09□□□□□ -1.75
MSH3P20585 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSH3P20585 SGO1P1-201ENST00000603525 1447 ntBASIC4.09□□□□□ -1.75
MSH3P20585 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
MSH3P20585 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSH3P20585 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.09□□□□□ -1.76
MSH3P20585 AC046144.1-201ENST00000478559 1853 ntBASIC4.09□□□□□ -1.76
MSH3P20585 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
MSH3P20585 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 OR11H4-201ENST00000315409 1082 ntBASIC4.08□□□□□ -1.76
MSH3P20585 ERCC6-202ENST00000374127 1782 ntBASIC4.08□□□□□ -1.76
MSH3P20585 OR52E6-202ENST00000379946 954 ntBASIC4.08□□□□□ -1.76
MSH3P20585 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 MIR16-1-201ENST00000385271 89 ntBASIC4.08□□□□□ -1.76
MSH3P20585 RN7SKP33-201ENST00000410942 340 ntBASIC4.08□□□□□ -1.76
MSH3P20585 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.08□□□□□ -1.76
MSH3P20585 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.08□□□□□ -1.76
MSH3P20585 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.08□□□□□ -1.76
MSH3P20585 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.08□□□□□ -1.76
MSH3P20585 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.08□□□□□ -1.76
MSH3P20585 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC4.08□□□□□ -1.76
MSH3P20585 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.08□□□□□ -1.76
MSH3P20585 AC007327.1-201ENST00000447461 264 ntBASIC4.08□□□□□ -1.76
MSH3P20585 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.08□□□□□ -1.76
MSH3P20585 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC4.08□□□□□ -1.76
MSH3P20585 RPL7P19-201ENST00000469948 618 ntBASIC4.08□□□□□ -1.76
MSH3P20585 S100A11P1-201ENST00000477525 312 ntBASIC4.08□□□□□ -1.76
MSH3P20585 NF1-214ENST00000490416 1329 ntTSL 3 BASIC4.08□□□□□ -1.76
MSH3P20585 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.08□□□□□ -1.76
MSH3P20585 AC091951.3-201ENST00000504093 246 ntBASIC4.08□□□□□ -1.76
MSH3P20585 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC4.08□□□□□ -1.76
MSH3P20585 SNORD116-26-201ENST00000516006 96 ntBASIC4.08□□□□□ -1.76
MSH3P20585 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.08□□□□□ -1.76
MSH3P20585 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.08□□□□□ -1.76
MSH3P20585 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.08□□□□□ -1.76
MSH3P20585 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.08□□□□□ -1.76
MSH3P20585 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.08□□□□□ -1.76
MSH3P20585 AC009094.1-201ENST00000564443 426 ntBASIC4.08□□□□□ -1.76
MSH3P20585 RPL23AP87-202ENST00000573039 466 ntBASIC4.08□□□□□ -1.76
MSH3P20585 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC4.08□□□□□ -1.76
MSH3P20585 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.08□□□□□ -1.76
MSH3P20585 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.08□□□□□ -1.76
MSH3P20585 AC012603.1-201ENST00000606424 528 ntBASIC4.08□□□□□ -1.76
MSH3P20585 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 AC004825.2-201ENST00000616634 455 ntBASIC4.08□□□□□ -1.76
MSH3P20585 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 AC018926.3-201ENST00000618841 406 ntBASIC4.08□□□□□ -1.76
MSH3P20585 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms