Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC3.88□□□□□ -1.79
MSH4O15457 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.88□□□□□ -1.79
MSH4O15457 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC3.88□□□□□ -1.79
MSH4O15457 AP006248.2-201ENST00000623309 592 ntBASIC3.88□□□□□ -1.79
MSH4O15457 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.88□□□□□ -1.79
MSH4O15457 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.88□□□□□ -1.79
MSH4O15457 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
MSH4O15457 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSH4O15457 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSH4O15457 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH4O15457 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH4O15457 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH4O15457 AC032011.1-201ENST00000611703 1549 ntBASIC3.87□□□□□ -1.79
MSH4O15457 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH4O15457 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH4O15457 BX323014.1-201ENST00000412876 237 ntBASIC3.87□□□□□ -1.79
MSH4O15457 RPS7P15-201ENST00000415804 584 ntBASIC3.87□□□□□ -1.79
MSH4O15457 AC234782.4-201ENST00000417646 1048 ntBASIC3.87□□□□□ -1.79
MSH4O15457 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.87□□□□□ -1.79
MSH4O15457 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.87□□□□□ -1.79
MSH4O15457 AL357552.1-201ENST00000445254 415 ntBASIC3.87□□□□□ -1.79
MSH4O15457 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.87□□□□□ -1.79
MSH4O15457 MTND2P30-201ENST00000456663 382 ntBASIC3.87□□□□□ -1.79
MSH4O15457 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH4O15457 AP000563.1-201ENST00000490865 758 ntBASIC3.87□□□□□ -1.79
MSH4O15457 AC093663.1-201ENST00000497190 394 ntBASIC3.87□□□□□ -1.79
MSH4O15457 AC023050.1-201ENST00000498198 304 ntBASIC3.87□□□□□ -1.79
MSH4O15457 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.87□□□□□ -1.79
MSH4O15457 COL6A4P2-205ENST00000509855 506 ntBASIC3.87□□□□□ -1.79
MSH4O15457 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
MSH4O15457 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH4O15457 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH4O15457 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH4O15457 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH4O15457 OR4U1P-201ENST00000554958 912 ntBASIC3.87□□□□□ -1.79
MSH4O15457 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH4O15457 PCNAP1-202ENST00000595299 752 ntBASIC3.87□□□□□ -1.79
MSH4O15457 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.87□□□□□ -1.79
MSH4O15457 AC127502.3-201ENST00000636170 1206 ntBASIC3.87□□□□□ -1.79
MSH4O15457 AL031985.3-201ENST00000565390 2449 ntBASIC3.87□□□□□ -1.79
MSH4O15457 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH4O15457 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH4O15457 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH4O15457 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.87□□□□□ -1.79
MSH4O15457 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.86□□□□□ -1.79
MSH4O15457 AC027287.1-201ENST00000553115 1453 ntBASIC3.86□□□□□ -1.79
MSH4O15457 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH4O15457 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSH4O15457 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
MSH4O15457 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSH4O15457 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSH4O15457 SNORA70.4-201ENST00000365509 134 ntBASIC3.86□□□□□ -1.79
MSH4O15457 AL136116.1-201ENST00000403591 381 ntBASIC3.86□□□□□ -1.79
MSH4O15457 HMGB3P18-201ENST00000406327 590 ntBASIC3.86□□□□□ -1.79
MSH4O15457 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH4O15457 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.86□□□□□ -1.79
MSH4O15457 ELOCP11-201ENST00000436690 332 ntBASIC3.86□□□□□ -1.79
MSH4O15457 MTND4P15-201ENST00000437913 1033 ntBASIC3.86□□□□□ -1.79
MSH4O15457 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH4O15457 RPS27P5-201ENST00000444247 244 ntBASIC3.86□□□□□ -1.79
MSH4O15457 ELOCP16-201ENST00000444494 332 ntBASIC3.86□□□□□ -1.79
MSH4O15457 ARL5AP2-201ENST00000444698 533 ntBASIC3.86□□□□□ -1.79
MSH4O15457 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH4O15457 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSH4O15457 PRSS3P4-201ENST00000453323 162 ntBASIC3.86□□□□□ -1.79
MSH4O15457 RPL37P3-201ENST00000456825 293 ntBASIC3.86□□□□□ -1.79
MSH4O15457 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH4O15457 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH4O15457 PRELID3BP7-201ENST00000503606 469 ntBASIC3.86□□□□□ -1.79
MSH4O15457 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH4O15457 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.86□□□□□ -1.79
MSH4O15457 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH4O15457 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.86□□□□□ -1.79
MSH4O15457 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSH4O15457 AC005412.1-201ENST00000580812 1049 ntBASIC3.86□□□□□ -1.79
MSH4O15457 ABI1P1-201ENST00000603375 1120 ntBASIC3.86□□□□□ -1.79
MSH4O15457 ELOCP35-201ENST00000604289 336 ntBASIC3.86□□□□□ -1.79
MSH4O15457 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH4O15457 AP001033.2-201ENST00000609701 1003 ntBASIC3.86□□□□□ -1.79
MSH4O15457 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.86□□□□□ -1.79
MSH4O15457 AC000123.2-201ENST00000623124 461 ntBASIC3.86□□□□□ -1.79
MSH4O15457 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH4O15457 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH4O15457 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
MSH4O15457 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
MSH4O15457 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH4O15457 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH4O15457 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSH4O15457 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
MSH4O15457 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSH4O15457 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSH4O15457 AL139811.1-201ENST00000424779 2299 ntBASIC3.86□□□□□ -1.79
MSH4O15457 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH4O15457 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSH4O15457 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSH4O15457 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.85□□□□□ -1.79
MSH4O15457 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
MSH4O15457 RNA5SP197-201ENST00000363357 119 ntBASIC3.85□□□□□ -1.79
MSH4O15457 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC3.85□□□□□ -1.79
MSH4O15457 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 143.2 ms