Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC3Q9BQI4 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 VN1R8P-201ENST00000407739 893 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AL449283.1-202ENST00000418249 604 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 PAICSP7-201ENST00000419829 962 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 RPL37P1-201ENST00000432310 284 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 ELOCP11-201ENST00000436690 332 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 RPL23AP89-201ENST00000439324 255 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 ELOCP16-201ENST00000444494 332 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC112492.1-201ENST00000449607 712 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 RPL7P31-201ENST00000450192 724 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 ZNF886P-201ENST00000450781 723 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC022034.3-201ENST00000471393 478 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 GAPDHP36-201ENST00000480688 918 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 VWA8P1-201ENST00000510889 176 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 RNU6-488P-201ENST00000515918 99 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 RN7SKP96-201ENST00000516948 297 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AF279873.1-201ENST00000523393 313 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 OR4C2P-201ENST00000530855 1064 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC063950.1-201ENST00000552036 308 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AP000238.1-201ENST00000608759 426 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AL355816.2-201ENST00000610049 647 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC009237.15-201ENST00000610252 501 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 MIR7702-201ENST00000621931 59 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AP001002.2-201ENST00000625137 386 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC000367.1-201ENST00000452711 1766 ntBASIC3.99□□□□□ -1.77
CCDC3Q9BQI4 AC016588.2-201ENST00000632484 3021 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 RNU1-108P-201ENST00000362556 161 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 PRRC2CP1-201ENST00000404428 159 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 RNA5SP146-201ENST00000410743 123 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 OR5BE1P-201ENST00000425977 939 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 RWDD4P2-201ENST00000426392 563 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 SKP1P3-201ENST00000429280 487 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AL445584.1-201ENST00000431451 330 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 GTF2IP7-202ENST00000436677 309 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC004865.1-201ENST00000442276 1003 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC006011.1-201ENST00000442758 349 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 RPS4XP4-201ENST00000443195 763 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC233982.1-201ENST00000451247 436 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC133473.1-201ENST00000455173 299 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 RPL7P1-201ENST00000468161 747 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 RPL7P9-201ENST00000468715 747 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AP000893.1-201ENST00000474462 794 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 RPL23AP44-201ENST00000482216 473 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 RPL29P14-201ENST00000495837 428 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 RNA5SP143-201ENST00000516936 115 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 RNA5SP135-201ENST00000517019 125 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 MTND1P24-201ENST00000552175 861 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 SERPINE4P-201ENST00000554978 281 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC044913.1-201ENST00000557200 430 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AL121834.1-201ENST00000572284 509 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC053481.3-201ENST00000577881 843 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 MIR4444-1-201ENST00000581696 74 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms