Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC007390.2-201ENST00000606229 3803 ntBASIC2.94□□□□□ -1.94
VPS13AQ96RL7 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS13AQ96RL7 OSBPL9P4-201ENST00000371707 1800 ntBASIC2.94□□□□□ -1.94
VPS13AQ96RL7 RPS3AP26-201ENST00000398259 784 ntBASIC2.94□□□□□ -1.94
VPS13AQ96RL7 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC2.94□□□□□ -1.94
VPS13AQ96RL7 AC010468.1-201ENST00000461022 817 ntBASIC2.94□□□□□ -1.94
VPS13AQ96RL7 SEPT7P6-201ENST00000469999 1143 ntBASIC2.94□□□□□ -1.94
VPS13AQ96RL7 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS13AQ96RL7 MIR4648-201ENST00000580107 72 ntBASIC2.94□□□□□ -1.94
VPS13AQ96RL7 PRELID3BP8-201ENST00000604148 295 ntBASIC2.94□□□□□ -1.94
VPS13AQ96RL7 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
VPS13AQ96RL7 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 RNA5SP289-201ENST00000362332 137 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 RN7SKP199-201ENST00000410325 305 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 FAM103A2P-201ENST00000444122 354 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 RPL5P30-201ENST00000465511 891 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 CKS1BP2-201ENST00000497342 240 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 RFPL4AP3-201ENST00000515267 345 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC025811.1-201ENST00000604312 472 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC126124.2-201ENST00000413542 321 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC008280.2-201ENST00000455473 307 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 PRDX3P4-201ENST00000470828 747 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC078785.3-201ENST00000476607 425 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 NPM1P29-201ENST00000483112 803 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AL139395.1-201ENST00000603662 160 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC026634.1-201ENST00000634369 198 ntBASIC2.93□□□□□ -1.94
VPS13AQ96RL7 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
VPS13AQ96RL7 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AC063923.1-201ENST00000478982 1619 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AC006840.1-201ENST00000623069 542 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 Z82217.1-201ENST00000625157 8149 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AL031595.2-201ENST00000624215 19071 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 ZNF658B-202ENST00000615961 3375 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 RHOT1P2-201ENST00000366423 333 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 MIR1287-201ENST00000408492 90 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 SKP1P1-201ENST00000438081 489 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 RNA5SP445-201ENST00000515889 115 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AC011270.1-201ENST00000558606 583 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 RNA5SP68-201ENST00000363885 119 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 MIR7-2-201ENST00000384970 110 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AL590103.1-201ENST00000434488 307 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 RN7SKP283-201ENST00000517197 270 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 AC044913.1-201ENST00000557200 430 ntBASIC2.92□□□□□ -1.94
VPS13AQ96RL7 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
VPS13AQ96RL7 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 RN7SKP223-201ENST00000410582 62 ntBASIC2.91□□□□□ -1.94
VPS13AQ96RL7 RNA5SP146-201ENST00000410743 123 ntBASIC2.91□□□□□ -1.94
VPS13AQ96RL7 AL009174.1-201ENST00000426577 416 ntBASIC2.91□□□□□ -1.94
VPS13AQ96RL7 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.91□□□□□ -1.94
VPS13AQ96RL7 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 DNAJC19P3-201ENST00000594491 331 ntBASIC2.91□□□□□ -1.94
VPS13AQ96RL7 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.91□□□□□ -1.94
VPS13AQ96RL7 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 AC025445.1-201ENST00000502728 300 ntBASIC2.91□□□□□ -1.94
VPS13AQ96RL7 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 179.1 ms