Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC090527.3-201ENST00000619041 548 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC024940.5-201ENST00000622889 474 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC009161.2-201ENST00000624626 138 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AL355834.1-201ENST00000556602 3965 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC133552.1-201ENST00000569988 4007 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC104964.3-201ENST00000606115 2860 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 HSPA8P18-201ENST00000439846 1928 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 FRG1BP-201ENST00000278882 761 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 Y_RNA.157-201ENST00000363638 102 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 SNORD81.2-201ENST00000365153 76 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 SNORA20.2-201ENST00000383922 131 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AL009179.1-201ENST00000406085 265 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 RN7SKP279-201ENST00000411383 298 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 RNF10P1-201ENST00000418589 369 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 MTCO2P5-201ENST00000422621 426 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AL606489.2-201ENST00000433886 234 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 TAAR7P-201ENST00000436141 242 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 HSPE1P28-201ENST00000443139 211 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 RN7SL466P-201ENST00000497546 295 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC010587.1-201ENST00000505809 469 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 NRBF2P4-201ENST00000520874 850 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC137627.1-201ENST00000545761 289 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 SULT1C2P2-201ENST00000562517 294 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC055876.1-202ENST00000567053 138 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 MIR3118-1-201ENST00000581787 76 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC005498.1-201ENST00000592125 465 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AL589674.2-201ENST00000604304 337 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 MIR6862-1-201ENST00000613016 70 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 MIR6862-2-201ENST00000614755 70 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC138649.5-201ENST00000637456 137 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AL049767.1-202ENST00000637826 242 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AP005435.3-201ENST00000531260 3198 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 XPOTP1-201ENST00000443317 2398 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 AC144833.1-201ENST00000567953 4089 ntBASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTCHD1Q96NR3 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 AC108467.2-201ENST00000617640 1597 ntBASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 RNU4-79P-201ENST00000362764 141 ntBASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 RNU6-1120P-201ENST00000362988 108 ntBASIC5.26□□□□□ -1.57
PTCHD1Q96NR3 RNU4-2-201ENST00000365668 141 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 334.5 ms