Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC092628.2-201ENST00000622492 339 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL138960.2-201ENST00000625145 535 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC068724.3-201ENST00000625906 87 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SKA3Q8IX90 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
SKA3Q8IX90 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SKA3Q8IX90 SNORD6-201ENST00000365444 73 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 RNU6-932P-201ENST00000391108 106 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 RNU6-628P-201ENST00000410675 107 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 PRELID3BP11-201ENST00000414230 479 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 Z97055.1-201ENST00000419730 712 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC246680.2-201ENST00000422106 389 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 OR8F1P-201ENST00000425243 930 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 NIPA2P1-201ENST00000426223 976 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC023347.2-201ENST00000433994 462 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC044797.1-201ENST00000445744 679 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AL929288.2-201ENST00000446368 407 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 CEACAMP4-201ENST00000457676 421 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 RPS17P11-201ENST00000474297 293 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC015724.1-201ENST00000478577 156 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 MTATP6P22-201ENST00000507369 598 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC087369.1-201ENST00000520775 996 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC022790.1-201ENST00000522872 204 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 OR4A12P-201ENST00000530847 918 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 OR8R1P-201ENST00000543943 764 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 AL442163.2-201ENST00000553912 710 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 AGGF1P6-201ENST00000569213 976 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AP000919.1-202ENST00000581139 1264 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 MRPS35P3-201ENST00000603189 709 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC067959.1-201ENST00000604334 379 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 RNVU1-4-201ENST00000612985 164 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC008121.2-201ENST00000614647 523 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 FAM91A3P-201ENST00000456826 2544 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 RIOK3P1-201ENST00000418778 1528 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
SKA3Q8IX90 AC046144.1-201ENST00000478559 1853 ntBASIC3.43□□□□□ -1.86
SKA3Q8IX90 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SKA3Q8IX90 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
SKA3Q8IX90 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SKA3Q8IX90 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 IPO8P1-201ENST00000455509 3109 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SKA3Q8IX90 RN7SKP227-201ENST00000364445 330 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 MIR124-3-201ENST00000384866 87 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SKA3Q8IX90 PPIAP31-201ENST00000405422 495 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 HNRNPDP2-201ENST00000406475 478 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 RN7SKP285-201ENST00000410137 318 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 AL049610.1-201ENST00000423374 372 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 MTND1P33-201ENST00000446251 917 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 AC005002.1-201ENST00000447458 540 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 AC233982.1-201ENST00000451247 436 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 RPL21P11-201ENST00000461458 483 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 AC104689.1-201ENST00000473356 768 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 RN7SKP21-201ENST00000516503 220 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 AP003102.1-201ENST00000525638 661 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.42□□□□□ -1.86
SKA3Q8IX90 AC067852.4-201ENST00000590314 478 ntBASIC3.42□□□□□ -1.86
SKA3Q8IX90 DNAJC19P3-201ENST00000594491 331 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms