Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PARP4P3-201ENST00000510265 317 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 MTND1P22-201ENST00000510572 951 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA1P49639 RPL12P22-201ENST00000519073 490 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 IGLV2-28-201ENST00000520681 304 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA1P49639 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA1P49639 OR5AK1P-201ENST00000524837 922 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 AP000790.1-201ENST00000528891 737 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA1P49639 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
HOXA1P49639 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA1P49639 ROCK1P1-201ENST00000573767 549 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 SNORD39.3-201ENST00000584451 71 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA1P49639 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA1P49639 AC112220.3-201ENST00000605502 502 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AL121932.1-201ENST00000605542 214 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AC091946.2-201ENST00000606105 291 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AC010424.2-201ENST00000607594 443 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AC092140.2-201ENST00000618027 521 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AL022401.1-201ENST00000619498 108 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 RNU6-156P-201ENST00000621869 107 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AC120349.2-201ENST00000625002 298 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA1P49639 FP325313.1-201ENST00000638228 703 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA1P49639 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA1P49639 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
HOXA1P49639 AC099654.2-201ENST00000433031 1980 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA1P49639 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA1P49639 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA1P49639 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA1P49639 MTND5P24-201ENST00000438892 1767 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA1P49639 AC066616.2-201ENST00000559334 1481 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 CDR1-202ENST00000625883 1485 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 CYP1D1P-201ENST00000416662 1433 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA1P49639 MTND4P34-201ENST00000572715 1371 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 RNU6-660P-201ENST00000364566 109 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 RNA5SP428-201ENST00000365129 132 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA1P49639 TMSB4XP8-201ENST00000402089 135 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AL031577.2-201ENST00000404133 280 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 RNU6-603P-201ENST00000411403 107 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 TMSB4XP6-201ENST00000415187 135 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA1P49639 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 TIMM9P2-201ENST00000419324 266 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 TMSB4XP1-201ENST00000424567 135 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 AC017083.1-201ENST00000428093 483 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 IFNNP1-201ENST00000429219 553 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA1P49639 AC010153.1-201ENST00000432862 727 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA1P49639 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 KRTAP8-2P-201ENST00000440620 186 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 PPIAP20-201ENST00000449839 135 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 RN7SL172P-201ENST00000460535 303 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA1P49639 RPL30P6-201ENST00000475925 342 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AC072039.1-201ENST00000477611 581 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AC068724.1-201ENST00000487100 792 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
HOXA1P49639 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA1P49639 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.82□□□□□ -1.8
HOXA1P49639 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA1P49639 SNRPCP2-201ENST00000504370 475 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA1P49639 ATP1B1P1-201ENST00000509767 915 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXA1P49639 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA1P49639 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
HOXA1P49639 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXA1P49639 MTCO1P30-201ENST00000515244 580 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 NDUFA5P2-201ENST00000519723 344 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA1P49639 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA1P49639 AC007115.1-201ENST00000546853 234 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AL121766.1-201ENST00000547436 487 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AC090502.2-201ENST00000549267 280 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 SERPINE4P-201ENST00000554978 281 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA1P49639 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXA1P49639 AC011447.4-201ENST00000587562 111 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 RPL7P50-201ENST00000600588 727 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms