Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 LINC00216-201ENST00000623548 1126 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 ZNF285B-201ENST00000561698 1767 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AL161912.2-201ENST00000565707 3007 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 MIR30E-201ENST00000362104 92 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 SNORA31-201ENST00000362607 130 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 MIR184-201ENST00000384962 84 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 USP9YP31-201ENST00000431405 881 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AL035246.1-201ENST00000433554 1255 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 RPS15AP29-201ENST00000445539 400 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 RPL12P26-201ENST00000452430 487 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 FTH1P2-201ENST00000466086 412 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 SNORA70.19-201ENST00000516717 90 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 HIGD1AP10-201ENST00000527837 282 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 OR5D17P-201ENST00000531492 978 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AC010591.1-201ENST00000603941 649 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AC112230.1-201ENST00000604342 547 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AL365503.1-201ENST00000605247 905 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 XIST_intron.1-201ENST00000619444 68 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AC022079.2-201ENST00000619739 566 ntBASIC3.48□□□□□ -1.85
TREX1Q9NSU2 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
TREX1Q9NSU2 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AL513302.2-201ENST00000562313 1842 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AP002088.1-201ENST00000382740 395 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 SNORA5A-201ENST00000384111 134 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 RNU6-185P-201ENST00000384421 107 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 RNU6-55P-201ENST00000411092 107 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 RNU6-954P-201ENST00000411355 107 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 RAB9AP3-201ENST00000412737 573 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 ARF4P2-201ENST00000430209 526 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 ATP5JP1-201ENST00000431631 322 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 RAB9AP1-201ENST00000449393 573 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 MTND2P8-201ENST00000450555 1025 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 HMGB1P26-201ENST00000452520 628 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AC078918.1-201ENST00000498515 228 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 HMGB1P3-201ENST00000502802 616 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 RN7SKP13-201ENST00000515933 244 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 MIR2276-201ENST00000516886 89 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 RN7SKP234-201ENST00000517173 224 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AL049870.4-201ENST00000555741 486 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 CENPUP2-201ENST00000555897 1186 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AC110801.1-201ENST00000623590 212 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 AC032011.1-201ENST00000611703 1549 ntBASIC3.47□□□□□ -1.85
TREX1Q9NSU2 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.47□□□□□ -1.85
TREX1Q9NSU2 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.85
TREX1Q9NSU2 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
TREX1Q9NSU2 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
TREX1Q9NSU2 AL356274.2-201ENST00000624379 3752 ntBASIC3.46□□□□□ -1.86
TREX1Q9NSU2 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
TREX1Q9NSU2 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
TREX1Q9NSU2 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC3.46□□□□□ -1.86
TREX1Q9NSU2 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.46□□□□□ -1.86
TREX1Q9NSU2 FABP12P1-201ENST00000401911 322 ntBASIC3.46□□□□□ -1.86
TREX1Q9NSU2 RSL24D1P1-201ENST00000404972 493 ntBASIC3.46□□□□□ -1.86
TREX1Q9NSU2 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.46□□□□□ -1.86
TREX1Q9NSU2 RN7SKP111-201ENST00000410349 271 ntBASIC3.46□□□□□ -1.86
TREX1Q9NSU2 MTCO1P57-201ENST00000432182 261 ntBASIC3.46□□□□□ -1.86
TREX1Q9NSU2 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms