Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 RNU6-853P-201ENST00000364306 107 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 RNY4P34-201ENST00000364779 95 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 RPL17P50-201ENST00000396131 546 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 BTBD10P2-201ENST00000404779 676 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 BTF3P7-201ENST00000407097 488 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 MTND1P21-201ENST00000412991 285 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 BX510359.3-201ENST00000422168 306 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC108075.1-201ENST00000424692 529 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC104837.2-201ENST00000427236 424 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 RPS20P1-201ENST00000434853 354 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AL450263.2-201ENST00000439400 589 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 PSPHP1-201ENST00000450062 261 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 SBDSP1-204ENST00000453858 737 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 RPS7P7-201ENST00000463499 571 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AL136126.1-201ENST00000473603 402 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 RPS4XP14-201ENST00000493072 781 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 RPSAP51-201ENST00000497462 645 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 RNU6-714P-201ENST00000516963 103 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 RNA5SP373-201ENST00000517271 95 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 IGLV2-28-201ENST00000520681 304 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AL157394.1-201ENST00000562983 1224 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AL391840.1-201ENST00000571144 367 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 MTCO3P24-201ENST00000572729 782 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 OR4G1P-201ENST00000588632 938 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC011468.4-201ENST00000603942 409 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AL390208.1-201ENST00000605885 644 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AL592295.2-201ENST00000612578 206 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 AC092447.10-201ENST00000620607 1652 ntBASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRIM39Q9HCM9 KPNA2P2-201ENST00000419546 1489 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 Z95331.1-201ENST00000623075 23112 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 OR9K1P-201ENST00000326513 941 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 Y_RNA.248-201ENST00000364501 109 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 RNU6-171P-201ENST00000384354 107 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 MIR1178-201ENST00000408396 91 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 RNU2-8P-201ENST00000410727 190 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 RPL31P2-201ENST00000413849 377 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 RPL31P45-201ENST00000419532 356 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AL358176.3-201ENST00000420757 454 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 USP9YP18-201ENST00000425912 695 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AL035410.1-201ENST00000427409 427 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 FAM103A2P-201ENST00000444122 354 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 GAPDHP17-201ENST00000449858 1001 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 OFD1P4Y-201ENST00000455273 1179 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AC079168.1-201ENST00000458741 345 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AP000797.2-201ENST00000475768 606 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 RPS4XP20-201ENST00000505751 772 ntBASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.26□□□□□ -1.57
TRIM39Q9HCM9 AC010493.1-201ENST00000513479 292 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms