Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SOX3P41225 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
SOX3P41225 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SOX3P41225 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.82□□□□□ -1.8
SOX3P41225 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SOX3P41225 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SOX3P41225 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SOX3P41225 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SOX3P41225 OR11H4-201ENST00000315409 1082 ntBASIC3.82□□□□□ -1.8
SOX3P41225 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
SOX3P41225 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
SOX3P41225 MIR708-201ENST00000390708 88 ntBASIC3.82□□□□□ -1.8
SOX3P41225 SFR1P1-201ENST00000403720 688 ntBASIC3.82□□□□□ -1.8
SOX3P41225 SNORA3C-201ENST00000408792 125 ntBASIC3.82□□□□□ -1.8
SOX3P41225 RNU6-272P-201ENST00000411028 104 ntBASIC3.82□□□□□ -1.8
SOX3P41225 OR8G2P-201ENST00000412796 908 ntBASIC3.82□□□□□ -1.8
SOX3P41225 AL356320.2-201ENST00000417263 507 ntBASIC3.82□□□□□ -1.8
SOX3P41225 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.82□□□□□ -1.8
SOX3P41225 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.82□□□□□ -1.8
SOX3P41225 PAICSP7-201ENST00000419829 962 ntBASIC3.82□□□□□ -1.8
SOX3P41225 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.82□□□□□ -1.8
SOX3P41225 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.82□□□□□ -1.8
SOX3P41225 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.82□□□□□ -1.8
SOX3P41225 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.82□□□□□ -1.8
SOX3P41225 AC004865.1-201ENST00000442276 1003 ntBASIC3.82□□□□□ -1.8
SOX3P41225 ELOCP13-201ENST00000443934 329 ntBASIC3.82□□□□□ -1.8
SOX3P41225 AC239809.1-201ENST00000450470 217 ntBASIC3.82□□□□□ -1.8
SOX3P41225 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.82□□□□□ -1.8
SOX3P41225 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SOX3P41225 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.82□□□□□ -1.8
SOX3P41225 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.82□□□□□ -1.8
SOX3P41225 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.82□□□□□ -1.8
SOX3P41225 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.82□□□□□ -1.8
SOX3P41225 AC090281.1-201ENST00000523019 276 ntBASIC3.82□□□□□ -1.8
SOX3P41225 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.82□□□□□ -1.8
SOX3P41225 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.82□□□□□ -1.8
SOX3P41225 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.82□□□□□ -1.8
SOX3P41225 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.82□□□□□ -1.8
SOX3P41225 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.82□□□□□ -1.8
SOX3P41225 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.82□□□□□ -1.8
SOX3P41225 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.82□□□□□ -1.8
SOX3P41225 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.82□□□□□ -1.8
SOX3P41225 AL360157.1-201ENST00000565962 87 ntBASIC3.82□□□□□ -1.8
SOX3P41225 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.82□□□□□ -1.8
SOX3P41225 MTND3P13-201ENST00000574391 343 ntBASIC3.82□□□□□ -1.8
SOX3P41225 MIR5708-201ENST00000579723 85 ntBASIC3.82□□□□□ -1.8
SOX3P41225 AL392112.1-201ENST00000605115 829 ntBASIC3.82□□□□□ -1.8
SOX3P41225 AC090948.2-201ENST00000607363 564 ntBASIC3.82□□□□□ -1.8
SOX3P41225 RNU4-89P-201ENST00000607443 133 ntBASIC3.82□□□□□ -1.8
SOX3P41225 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.82□□□□□ -1.8
SOX3P41225 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.82□□□□□ -1.8
SOX3P41225 RNA5SP196-201ENST00000625967 102 ntBASIC3.82□□□□□ -1.8
SOX3P41225 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.82□□□□□ -1.8
SOX3P41225 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
SOX3P41225 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SOX3P41225 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.82□□□□□ -1.8
SOX3P41225 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.82□□□□□ -1.8
SOX3P41225 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SOX3P41225 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.81□□□□□ -1.8
SOX3P41225 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
SOX3P41225 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SOX3P41225 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.81□□□□□ -1.8
SOX3P41225 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SOX3P41225 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SOX3P41225 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SOX3P41225 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SOX3P41225 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
SOX3P41225 MIR372-201ENST00000362225 67 ntBASIC3.81□□□□□ -1.8
SOX3P41225 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SOX3P41225 ENSAP1-201ENST00000392855 326 ntBASIC3.81□□□□□ -1.8
SOX3P41225 RPL21P65-201ENST00000406094 466 ntBASIC3.81□□□□□ -1.8
SOX3P41225 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
SOX3P41225 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.81□□□□□ -1.8
SOX3P41225 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.81□□□□□ -1.8
SOX3P41225 AC084290.1-201ENST00000434995 374 ntBASIC3.81□□□□□ -1.8
SOX3P41225 AL356276.2-201ENST00000435919 558 ntBASIC3.81□□□□□ -1.8
SOX3P41225 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.81□□□□□ -1.8
SOX3P41225 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.81□□□□□ -1.8
SOX3P41225 EEF1A1P39-201ENST00000440791 250 ntBASIC3.81□□□□□ -1.8
SOX3P41225 CR769776.1-201ENST00000441254 787 ntBASIC3.81□□□□□ -1.8
SOX3P41225 AC006011.1-201ENST00000442758 349 ntBASIC3.81□□□□□ -1.8
SOX3P41225 HSFY6P-201ENST00000445573 403 ntBASIC3.81□□□□□ -1.8
SOX3P41225 HMGB1P16-201ENST00000447155 540 ntBASIC3.81□□□□□ -1.8
SOX3P41225 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.81□□□□□ -1.8
SOX3P41225 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.81□□□□□ -1.8
SOX3P41225 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.81□□□□□ -1.8
SOX3P41225 EIF4A1P11-201ENST00000451239 222 ntBASIC3.81□□□□□ -1.8
SOX3P41225 AC133473.1-201ENST00000455173 299 ntBASIC3.81□□□□□ -1.8
SOX3P41225 FTH1P2-201ENST00000466086 412 ntBASIC3.81□□□□□ -1.8
SOX3P41225 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.81□□□□□ -1.8
SOX3P41225 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.81□□□□□ -1.8
SOX3P41225 HIGD1AP6-201ENST00000521833 279 ntBASIC3.81□□□□□ -1.8
SOX3P41225 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.81□□□□□ -1.8
SOX3P41225 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.81□□□□□ -1.8
SOX3P41225 AC092747.2-201ENST00000545069 983 ntBASIC3.81□□□□□ -1.8
SOX3P41225 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.81□□□□□ -1.8
SOX3P41225 AC063950.1-201ENST00000552036 308 ntBASIC3.81□□□□□ -1.8
SOX3P41225 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.81□□□□□ -1.8
SOX3P41225 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.81□□□□□ -1.8
SOX3P41225 AC015688.2-201ENST00000584523 262 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms