Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
BRCA1P38398 RPL7L1P1-201ENST00000448259 785 ntBASIC3.98□□□□□ -1.77
BRCA1P38398 OR7L1P-201ENST00000456181 380 ntBASIC3.98□□□□□ -1.77
BRCA1P38398 RN7SL432P-201ENST00000484057 298 ntBASIC3.98□□□□□ -1.77
BRCA1P38398 HMGB1P6-201ENST00000569046 646 ntBASIC3.98□□□□□ -1.77
BRCA1P38398 AC245100.7-201ENST00000609678 442 ntBASIC3.98□□□□□ -1.77
BRCA1P38398 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.98□□□□□ -1.77
BRCA1P38398 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
BRCA1P38398 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
BRCA1P38398 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
BRCA1P38398 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
BRCA1P38398 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.97□□□□□ -1.77
BRCA1P38398 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.97□□□□□ -1.77
BRCA1P38398 AC139713.2-215ENST00000641428 5037 ntBASIC3.97□□□□□ -1.77
BRCA1P38398 CNOT6LP1-201ENST00000559681 1462 ntBASIC3.97□□□□□ -1.77
BRCA1P38398 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
BRCA1P38398 AC104446.1-201ENST00000613728 1321 ntBASIC3.97□□□□□ -1.77
BRCA1P38398 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC3.97□□□□□ -1.77
BRCA1P38398 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
BRCA1P38398 SNORD67-201ENST00000390833 111 ntBASIC3.97□□□□□ -1.77
BRCA1P38398 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
BRCA1P38398 RNA5SP296-201ENST00000410523 111 ntBASIC3.97□□□□□ -1.77
BRCA1P38398 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.97□□□□□ -1.77
BRCA1P38398 RPL31P53-201ENST00000457065 348 ntBASIC3.97□□□□□ -1.77
BRCA1P38398 RPS3AP50-201ENST00000487064 803 ntBASIC3.97□□□□□ -1.77
BRCA1P38398 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC3.97□□□□□ -1.77
BRCA1P38398 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.97□□□□□ -1.77
BRCA1P38398 RPL23AP92-201ENST00000603609 255 ntBASIC3.97□□□□□ -1.77
BRCA1P38398 AL359535.1-201ENST00000612100 1087 ntBASIC3.97□□□□□ -1.77
BRCA1P38398 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
BRCA1P38398 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
BRCA1P38398 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.97□□□□□ -1.77
BRCA1P38398 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.97□□□□□ -1.77
BRCA1P38398 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
BRCA1P38398 RNA5SP104-201ENST00000410989 118 ntBASIC3.96□□□□□ -1.77
BRCA1P38398 BTF3P9-201ENST00000418784 283 ntBASIC3.96□□□□□ -1.77
BRCA1P38398 MTND2P11-201ENST00000423638 648 ntBASIC3.96□□□□□ -1.77
BRCA1P38398 MRPS18BP2-201ENST00000434310 759 ntBASIC3.96□□□□□ -1.77
BRCA1P38398 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
BRCA1P38398 CCNHP1-201ENST00000513311 678 ntBASIC3.96□□□□□ -1.77
BRCA1P38398 RNU6-319P-201ENST00000516025 108 ntBASIC3.96□□□□□ -1.77
BRCA1P38398 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.96□□□□□ -1.77
BRCA1P38398 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.96□□□□□ -1.77
BRCA1P38398 AC139713.2-210ENST00000641741 992 ntBASIC3.96□□□□□ -1.77
BRCA1P38398 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
BRCA1P38398 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.96□□□□□ -1.77
BRCA1P38398 AC138393.1-206ENST00000540997 1886 ntBASIC3.96□□□□□ -1.78
BRCA1P38398 CR383658.2-201ENST00000547576 1525 ntBASIC3.96□□□□□ -1.78
BRCA1P38398 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.96□□□□□ -1.78
BRCA1P38398 AC073325.2-201ENST00000339545 159 ntBASIC3.96□□□□□ -1.78
BRCA1P38398 AC007899.1-201ENST00000412776 775 ntBASIC3.96□□□□□ -1.78
BRCA1P38398 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC3.96□□□□□ -1.78
BRCA1P38398 RPL7P36-201ENST00000444633 681 ntBASIC3.96□□□□□ -1.78
BRCA1P38398 AC126389.1-201ENST00000477436 290 ntBASIC3.96□□□□□ -1.78
BRCA1P38398 AC010306.1-201ENST00000523223 1117 ntBASIC3.96□□□□□ -1.78
BRCA1P38398 uc_338.25-201ENST00000613756 156 ntBASIC3.96□□□□□ -1.78
BRCA1P38398 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.96□□□□□ -1.78
BRCA1P38398 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.96□□□□□ -1.78
BRCA1P38398 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
BRCA1P38398 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.95□□□□□ -1.78
BRCA1P38398 AC000123.3-201ENST00000624029 4975 ntBASIC3.95□□□□□ -1.78
BRCA1P38398 SNORA71.1-201ENST00000364523 117 ntBASIC3.95□□□□□ -1.78
BRCA1P38398 RNU6-564P-201ENST00000410983 104 ntBASIC3.95□□□□□ -1.78
BRCA1P38398 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
BRCA1P38398 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.95□□□□□ -1.78
BRCA1P38398 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3.95□□□□□ -1.78
BRCA1P38398 AC093156.1-201ENST00000440382 670 ntBASIC3.95□□□□□ -1.78
BRCA1P38398 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.95□□□□□ -1.78
BRCA1P38398 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
BRCA1P38398 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC3.95□□□□□ -1.78
BRCA1P38398 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.95□□□□□ -1.78
BRCA1P38398 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.95□□□□□ -1.78
BRCA1P38398 AP003499.2-201ENST00000624100 483 ntBASIC3.95□□□□□ -1.78
BRCA1P38398 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
BRCA1P38398 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
BRCA1P38398 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.95□□□□□ -1.78
BRCA1P38398 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
BRCA1P38398 RNU4-44P-201ENST00000363050 141 ntBASIC3.94□□□□□ -1.78
BRCA1P38398 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
BRCA1P38398 RPS4XP8-201ENST00000402039 771 ntBASIC3.94□□□□□ -1.78
BRCA1P38398 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.94□□□□□ -1.78
BRCA1P38398 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.94□□□□□ -1.78
BRCA1P38398 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.94□□□□□ -1.78
BRCA1P38398 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.94□□□□□ -1.78
BRCA1P38398 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.94□□□□□ -1.78
BRCA1P38398 CD24P2-201ENST00000565486 219 ntBASIC3.94□□□□□ -1.78
BRCA1P38398 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.94□□□□□ -1.78
BRCA1P38398 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.94□□□□□ -1.78
BRCA1P38398 AL356321.1-201ENST00000621360 228 ntBASIC3.94□□□□□ -1.78
BRCA1P38398 AP001005.3-201ENST00000622049 129 ntBASIC3.94□□□□□ -1.78
BRCA1P38398 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
BRCA1P38398 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
BRCA1P38398 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC3.94□□□□□ -1.78
BRCA1P38398 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
BRCA1P38398 SNORA18.3-201ENST00000384122 132 ntBASIC3.94□□□□□ -1.78
BRCA1P38398 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
BRCA1P38398 AC019097.1-201ENST00000424783 735 ntBASIC3.94□□□□□ -1.78
BRCA1P38398 RPL21P112-201ENST00000434403 463 ntBASIC3.94□□□□□ -1.78
BRCA1P38398 AC128713.1-201ENST00000471495 306 ntBASIC3.94□□□□□ -1.78
BRCA1P38398 AC105918.1-201ENST00000474399 838 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms