Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RNU4-82P-201ENST00000362443 140 ntBASIC3.89□□□□□ -1.79
SCN4AP35499 SNORA71.1-201ENST00000364523 117 ntBASIC3.89□□□□□ -1.79
SCN4AP35499 RPL23AP82-202ENST00000427528 469 ntBASIC3.89□□□□□ -1.79
SCN4AP35499 AC013410.1-201ENST00000436223 1232 ntBASIC3.89□□□□□ -1.79
SCN4AP35499 RPS24P13-201ENST00000442520 397 ntBASIC3.89□□□□□ -1.79
SCN4AP35499 CENPBD1P1-201ENST00000464061 469 ntBASIC3.89□□□□□ -1.79
SCN4AP35499 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.89□□□□□ -1.79
SCN4AP35499 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.89□□□□□ -1.79
SCN4AP35499 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.89□□□□□ -1.79
SCN4AP35499 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.89□□□□□ -1.79
SCN4AP35499 AC009101.1-201ENST00000568135 242 ntBASIC3.89□□□□□ -1.79
SCN4AP35499 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.89□□□□□ -1.79
SCN4AP35499 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.89□□□□□ -1.79
SCN4AP35499 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
SCN4AP35499 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SCN4AP35499 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
SCN4AP35499 RIOK3P1-201ENST00000418778 1528 ntBASIC3.89□□□□□ -1.79
SCN4AP35499 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
SCN4AP35499 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
SCN4AP35499 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
SCN4AP35499 SAGE4P-201ENST00000442271 3381 ntBASIC3.89□□□□□ -1.79
SCN4AP35499 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
SCN4AP35499 MTND4P10-201ENST00000446199 1363 ntBASIC3.89□□□□□ -1.79
SCN4AP35499 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC3.89□□□□□ -1.79
SCN4AP35499 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SCN4AP35499 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SCN4AP35499 IPMKP1-201ENST00000425988 855 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 PPIAP17-201ENST00000438507 471 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 AC112492.1-201ENST00000449607 712 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.88□□□□□ -1.79
SCN4AP35499 RN7SL432P-201ENST00000484057 298 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.88□□□□□ -1.79
SCN4AP35499 RN7SKP132-201ENST00000516001 208 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.88□□□□□ -1.79
SCN4AP35499 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.88□□□□□ -1.79
SCN4AP35499 MIR4644-201ENST00000579929 84 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 ATP1B3P1-201ENST00000605365 821 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 AC139713.2-210ENST00000641741 992 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
SCN4AP35499 CR383658.2-201ENST00000547576 1525 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
SCN4AP35499 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
SCN4AP35499 RPS26P40-201ENST00000435209 294 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 AC074367.1-201ENST00000438685 1125 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 NPM1P17-201ENST00000479221 602 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC3.88□□□□□ -1.79
SCN4AP35499 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.88□□□□□ -1.79
SCN4AP35499 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.88□□□□□ -1.79
SCN4AP35499 H3F3AP1-201ENST00000559984 334 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 EIF5A2P1-201ENST00000564027 460 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.88□□□□□ -1.79
SCN4AP35499 MIR2682-201ENST00000580305 110 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 UBL5P2-201ENST00000583788 219 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.88□□□□□ -1.79
SCN4AP35499 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.88□□□□□ -1.79
SCN4AP35499 IGHVIII-44-202ENST00000636235 289 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 AC009950.2-201ENST00000636548 183 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 AC010149.2-201ENST00000637608 315 ntBASIC3.88□□□□□ -1.79
SCN4AP35499 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SCN4AP35499 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SCN4AP35499 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SCN4AP35499 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SCN4AP35499 CR381670.1-201ENST00000624291 1693 ntBASIC3.87□□□□□ -1.79
SCN4AP35499 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SCN4AP35499 HMGN2P8-201ENST00000391458 268 ntBASIC3.87□□□□□ -1.79
SCN4AP35499 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.87□□□□□ -1.79
SCN4AP35499 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.87□□□□□ -1.79
SCN4AP35499 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.87□□□□□ -1.79
SCN4AP35499 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.87□□□□□ -1.79
SCN4AP35499 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.87□□□□□ -1.79
SCN4AP35499 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC3.87□□□□□ -1.79
SCN4AP35499 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.87□□□□□ -1.79
SCN4AP35499 RNU1-41P-201ENST00000516161 162 ntBASIC3.87□□□□□ -1.79
SCN4AP35499 RNU1-48P-201ENST00000516400 162 ntBASIC3.87□□□□□ -1.79
SCN4AP35499 AC008489.1-201ENST00000524271 483 ntBASIC3.87□□□□□ -1.79
SCN4AP35499 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC3.87□□□□□ -1.79
SCN4AP35499 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC3.87□□□□□ -1.79
SCN4AP35499 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.87□□□□□ -1.79
SCN4AP35499 AC067852.4-201ENST00000590314 478 ntBASIC3.87□□□□□ -1.79
SCN4AP35499 AL139286.1-201ENST00000604465 483 ntBASIC3.87□□□□□ -1.79
SCN4AP35499 AL162574.2-201ENST00000614618 657 ntBASIC3.87□□□□□ -1.79
SCN4AP35499 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
SCN4AP35499 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.87□□□□□ -1.79
SCN4AP35499 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SCN4AP35499 MIR423-201ENST00000362201 94 ntBASIC3.86□□□□□ -1.79
SCN4AP35499 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.86□□□□□ -1.79
SCN4AP35499 Y_RNA.638-201ENST00000459374 113 ntBASIC3.86□□□□□ -1.79
SCN4AP35499 SUMO2P4-201ENST00000504193 276 ntBASIC3.86□□□□□ -1.79
SCN4AP35499 AF186190.1-201ENST00000517470 480 ntBASIC3.86□□□□□ -1.79
SCN4AP35499 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.86□□□□□ -1.79
SCN4AP35499 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.86□□□□□ -1.79
SCN4AP35499 AC231759.1-201ENST00000616455 597 ntBASIC3.86□□□□□ -1.79
SCN4AP35499 CYCSP41-201ENST00000616920 296 ntBASIC3.86□□□□□ -1.79
SCN4AP35499 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.86□□□□□ -1.79
SCN4AP35499 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC3.86□□□□□ -1.79
SCN4AP35499 LINC01355-201ENST00000566551 5444 ntBASIC3.86□□□□□ -1.79
SCN4AP35499 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SCN4AP35499 AC104446.1-201ENST00000613728 1321 ntBASIC3.86□□□□□ -1.79
SCN4AP35499 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms