Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A3P25940 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A3P25940 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
COL5A3P25940 RNU6-249P-201ENST00000363016 102 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.87□□□□□ -1.79
COL5A3P25940 AC108734.1-201ENST00000439549 399 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 RPL7P59-201ENST00000447700 943 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 RPL7L1P1-201ENST00000448259 785 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.87□□□□□ -1.79
COL5A3P25940 AC000403.1-201ENST00000613696 3585 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A3P25940 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.87□□□□□ -1.79
COL5A3P25940 AC116096.1-201ENST00000566804 2314 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
COL5A3P25940 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.87□□□□□ -1.79
COL5A3P25940 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
COL5A3P25940 FAM35DP-201ENST00000323387 2712 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A3P25940 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A3P25940 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A3P25940 AC116158.1-201ENST00000560231 2129 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A3P25940 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A3P25940 OR1S2-201ENST00000302592 978 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 RPL12P26-201ENST00000452430 487 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.87□□□□□ -1.79
COL5A3P25940 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.87□□□□□ -1.79
COL5A3P25940 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.87□□□□□ -1.79
COL5A3P25940 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
COL5A3P25940 HMGB1P50-201ENST00000605814 607 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 OR2AS2P-201ENST00000606902 342 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 AL359535.1-201ENST00000612100 1087 ntBASIC3.87□□□□□ -1.79
COL5A3P25940 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A3P25940 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A3P25940 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A3P25940 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
COL5A3P25940 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A3P25940 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
COL5A3P25940 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC3.86□□□□□ -1.79
COL5A3P25940 SNORA9.2-201ENST00000365361 133 ntBASIC3.86□□□□□ -1.79
COL5A3P25940 RPS4XP8-201ENST00000402039 771 ntBASIC3.86□□□□□ -1.79
COL5A3P25940 RNA5SP31-201ENST00000411144 127 ntBASIC3.86□□□□□ -1.79
COL5A3P25940 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.86□□□□□ -1.79
COL5A3P25940 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A3P25940 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC3.86□□□□□ -1.79
COL5A3P25940 RPL7L1P13-201ENST00000511702 739 ntBASIC3.86□□□□□ -1.79
COL5A3P25940 ARL2BPP6-201ENST00000512757 439 ntBASIC3.86□□□□□ -1.79
COL5A3P25940 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.86□□□□□ -1.79
COL5A3P25940 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.86□□□□□ -1.79
COL5A3P25940 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.86□□□□□ -1.79
COL5A3P25940 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.85□□□□□ -1.79
COL5A3P25940 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A3P25940 FTLP6-201ENST00000355274 422 ntBASIC3.85□□□□□ -1.79
COL5A3P25940 SNORD15B-201ENST00000384714 146 ntBASIC3.85□□□□□ -1.79
COL5A3P25940 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
COL5A3P25940 AL353692.2-201ENST00000407054 335 ntBASIC3.85□□□□□ -1.79
COL5A3P25940 AL445213.1-201ENST00000412589 747 ntBASIC3.85□□□□□ -1.79
COL5A3P25940 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.85□□□□□ -1.79
COL5A3P25940 COX6CP8-201ENST00000522620 226 ntBASIC3.85□□□□□ -1.79
COL5A3P25940 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A3P25940 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.85□□□□□ -1.79
COL5A3P25940 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.85□□□□□ -1.79
COL5A3P25940 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.85□□□□□ -1.79
COL5A3P25940 NRBF2P5-201ENST00000603087 788 ntBASIC3.85□□□□□ -1.79
COL5A3P25940 AC004832.5-201ENST00000608677 401 ntBASIC3.85□□□□□ -1.79
COL5A3P25940 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A3P25940 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A3P25940 MTCO1P8-201ENST00000416914 1523 ntBASIC3.85□□□□□ -1.79
COL5A3P25940 AC000123.3-201ENST00000624029 4975 ntBASIC3.85□□□□□ -1.79
COL5A3P25940 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A3P25940 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
COL5A3P25940 THAP12P8-201ENST00000447914 2115 ntBASIC3.84□□□□□ -1.79
COL5A3P25940 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.84□□□□□ -1.79
COL5A3P25940 ZNF603P-201ENST00000405613 487 ntBASIC3.84□□□□□ -1.79
COL5A3P25940 AL645937.1-202ENST00000421799 937 ntBASIC3.84□□□□□ -1.79
COL5A3P25940 AC108938.1-201ENST00000451204 136 ntBASIC3.84□□□□□ -1.79
COL5A3P25940 PRDX3P4-201ENST00000470828 747 ntBASIC3.84□□□□□ -1.79
COL5A3P25940 AC126389.1-201ENST00000477436 290 ntBASIC3.84□□□□□ -1.79
COL5A3P25940 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC3.84□□□□□ -1.79
COL5A3P25940 RPL12P22-201ENST00000519073 490 ntBASIC3.84□□□□□ -1.79
COL5A3P25940 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A3P25940 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.84□□□□□ -1.79
COL5A3P25940 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.84□□□□□ -1.79
COL5A3P25940 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A3P25940 AC139713.2-210ENST00000641741 992 ntBASIC3.84□□□□□ -1.79
COL5A3P25940 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
COL5A3P25940 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A3P25940 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A3P25940 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.84□□□□□ -1.8
COL5A3P25940 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.8
COL5A3P25940 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
COL5A3P25940 RNU4-82P-201ENST00000362443 140 ntBASIC3.84□□□□□ -1.8
COL5A3P25940 RN7SKP56-201ENST00000410513 331 ntBASIC3.84□□□□□ -1.8
COL5A3P25940 ISCA1P2-201ENST00000438679 421 ntBASIC3.84□□□□□ -1.8
COL5A3P25940 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.84□□□□□ -1.8
COL5A3P25940 HCG17-214ENST00000453558 732 ntTSL 5 BASIC3.84□□□□□ -1.8
COL5A3P25940 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.84□□□□□ -1.8
COL5A3P25940 HMGN2P7-201ENST00000456186 273 ntBASIC3.84□□□□□ -1.8
COL5A3P25940 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.84□□□□□ -1.8
COL5A3P25940 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.84□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms