Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MIR6837-201ENST00000620884 64 ntBASIC4.57□□□□□ -1.68
HOXA3O43365 AC093648.1-201ENST00000623546 606 ntBASIC4.57□□□□□ -1.68
HOXA3O43365 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXA3O43365 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA3O43365 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
HOXA3O43365 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA3O43365 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
HOXA3O43365 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA3O43365 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA3O43365 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA3O43365 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.57□□□□□ -1.68
HOXA3O43365 LINC00622-201ENST00000562811 1570 ntBASIC4.57□□□□□ -1.68
HOXA3O43365 MTCO1P7-201ENST00000419523 1542 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA3O43365 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HOXA3O43365 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 AP005435.3-201ENST00000531260 3198 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
HOXA3O43365 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HOXA3O43365 Y_RNA.381-201ENST00000365666 102 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 BPHL-201ENST00000380368 797 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA3O43365 XGY1-201ENST00000381172 446 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 RNU6-171P-201ENST00000384354 107 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 RNU6-878P-201ENST00000384578 110 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HOXA3O43365 AC009804.1-201ENST00000400949 179 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AL121835.1-201ENST00000404250 354 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 MIR1286-201ENST00000408112 78 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 RPL35AP24-201ENST00000413846 330 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA3O43365 OR2B7P-201ENST00000429302 934 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA3O43365 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA3O43365 OR7E116P-201ENST00000448529 957 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA3O43365 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA3O43365 FDX1P2-201ENST00000450769 375 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 RPS20P20-201ENST00000460498 340 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 APOOP2-201ENST00000461561 539 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 COPS8P2-201ENST00000473228 627 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 UBA52P7-201ENST00000486088 380 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA3O43365 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC4.56□□□□□ -1.68
HOXA3O43365 RN7SKP99-201ENST00000517028 307 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA3O43365 AC107934.1-201ENST00000522215 217 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA3O43365 HAUS8P1-201ENST00000549005 542 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA3O43365 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA3O43365 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA3O43365 AC034105.3-201ENST00000565294 442 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AC053481.3-201ENST00000577881 843 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA3O43365 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA3O43365 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA3O43365 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA3O43365 AL136363.1-201ENST00000605349 337 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AC007038.2-201ENST00000608095 740 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AL355472.4-201ENST00000610233 626 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA3O43365 AL136221.1-201ENST00000621449 509 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HOXA3O43365 AC009161.2-201ENST00000624626 138 ntBASIC4.56□□□□□ -1.68
HOXA3O43365 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA3O43365 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA3O43365 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
HOXA3O43365 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA3O43365 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA3O43365 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HOXA3O43365 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA3O43365 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA3O43365 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA3O43365 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXA3O43365 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
HOXA3O43365 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA3O43365 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
HOXA3O43365 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXA3O43365 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
HOXA3O43365 AC235565.1-201ENST00000456962 1325 ntBASIC4.55□□□□□ -1.68
HOXA3O43365 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
HOXA3O43365 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA3O43365 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
HOXA3O43365 AC239868.2-201ENST00000564237 4527 ntBASIC4.55□□□□□ -1.68
HOXA3O43365 OR52B1P-201ENST00000316506 909 ntBASIC4.55□□□□□ -1.68
HOXA3O43365 RNU4-1-201ENST00000363925 141 ntBASIC4.55□□□□□ -1.68
HOXA3O43365 Y_RNA.356-201ENST00000365475 113 ntBASIC4.55□□□□□ -1.68
HOXA3O43365 RNU4-2-201ENST00000365668 141 ntBASIC4.55□□□□□ -1.68
HOXA3O43365 Y_RNA.509-201ENST00000384506 99 ntBASIC4.55□□□□□ -1.68
HOXA3O43365 Y_RNA.535-201ENST00000384612 99 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms