Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 UBA52P7-201ENST00000486088 380 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 OR5M14P-201ENST00000506803 618 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC091133.4-201ENST00000511142 308 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 RPL10P14-201ENST00000565265 298 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC234778.2-201ENST00000566241 354 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 MIR3913-1-201ENST00000577744 102 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 MIR7853-201ENST00000584820 132 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AL353997.4-201ENST00000586196 166 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC244107.2-201ENST00000611773 76 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 MIR6133-201ENST00000617057 108 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC004009.2-201ENST00000623016 728 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AP003400.3-201ENST00000624904 346 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AL049780.3-201ENST00000624612 1583 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 SAGE2P-201ENST00000420011 2126 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC235565.1-201ENST00000456962 1325 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 PABPC1P6-201ENST00000445594 1829 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC008079.2-201ENST00000623543 20396 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 MIR223-201ENST00000385204 110 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 MIR548F1-201ENST00000408667 84 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AL445669.1-201ENST00000426743 755 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 OR52B5P-201ENST00000435337 951 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 ARPC3P1-201ENST00000437218 533 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 SDCBPP1-201ENST00000440192 890 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 MTND4P18-201ENST00000447010 465 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC005297.2-201ENST00000450430 606 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 RN7SL172P-201ENST00000460535 303 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC058823.1-201ENST00000485315 474 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 MTAPP1-201ENST00000489154 819 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 RNU6-513P-201ENST00000516104 104 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 RNA5SP34-201ENST00000516887 130 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 RNA5SP230-201ENST00000517039 122 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 MED28P5-201ENST00000528254 438 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 UBE2FP2-201ENST00000566646 462 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AP005119.2-201ENST00000579735 1105 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC069307.1-201ENST00000602820 447 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC007566.2-201ENST00000603642 413 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AL161729.4-201ENST00000604650 476 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC090517.2-201ENST00000614966 680 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 U6.42-201ENST00000618440 107 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC015908.5-201ENST00000623289 343 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 PISRT1-201ENST00000626175 531 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 AC110994.2-201ENST00000635481 492 ntBASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM39Q9HCM9 CCT4P2-201ENST00000233836 1548 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms