Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3□□□□□ -1.93
VPS13AQ96RL7 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
VPS13AQ96RL7 AC092809.1-201ENST00000441469 474 ntBASIC3□□□□□ -1.93
VPS13AQ96RL7 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3□□□□□ -1.93
VPS13AQ96RL7 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC3□□□□□ -1.93
VPS13AQ96RL7 RPS3AP50-201ENST00000487064 803 ntBASIC3□□□□□ -1.93
VPS13AQ96RL7 AC083906.5-201ENST00000503722 328 ntBASIC3□□□□□ -1.93
VPS13AQ96RL7 AC112184.1-201ENST00000505179 312 ntBASIC3□□□□□ -1.93
VPS13AQ96RL7 AC107016.2-201ENST00000547968 190 ntBASIC3□□□□□ -1.93
VPS13AQ96RL7 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3□□□□□ -1.93
VPS13AQ96RL7 AC124856.1-201ENST00000600819 896 ntBASIC3□□□□□ -1.93
VPS13AQ96RL7 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 RMST-202ENST00000541282 2099 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AC026782.2-201ENST00000510845 636 ntBASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AC112653.1-201ENST00000443851 386 ntBASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AC069540.1-201ENST00000446320 988 ntBASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AC007566.2-201ENST00000603642 413 ntBASIC2.99□□□□□ -1.93
VPS13AQ96RL7 PLCE1P1-201ENST00000622094 305 ntBASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS13AQ96RL7 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AC073325.2-201ENST00000339545 159 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AC074367.1-201ENST00000438685 1125 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 ELOCP8-201ENST00000439309 332 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 ELOCP15-201ENST00000442090 332 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AC016696.1-201ENST00000446949 318 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 WASF1P1-201ENST00000447560 1131 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AC104687.1-201ENST00000485829 412 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AL034351.1-201ENST00000605288 668 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AL356321.1-201ENST00000621360 228 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 OR5BR1P-201ENST00000524992 1330 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 UBE2D3P1-201ENST00000436669 444 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AL158827.2-201ENST00000602494 330 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AC007318.2-201ENST00000620999 243 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AL691447.3-201ENST00000635020 330 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AC099063.3-201ENST00000642066 185 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 IDE-202ENST00000371581 4480 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AC117434.1-201ENST00000419971 836 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 RPL23AP23-201ENST00000452590 471 ntBASIC2.98□□□□□ -1.93
VPS13AQ96RL7 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS13AQ96RL7 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
VPS13AQ96RL7 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
VPS13AQ96RL7 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS13AQ96RL7 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
VPS13AQ96RL7 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS13AQ96RL7 HMGB3P14-201ENST00000494195 599 ntBASIC2.97□□□□□ -1.93
VPS13AQ96RL7 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS13AQ96RL7 AC108210.2-201ENST00000503681 201 ntBASIC2.97□□□□□ -1.93
VPS13AQ96RL7 AC009977.1-201ENST00000586015 570 ntBASIC2.97□□□□□ -1.93
VPS13AQ96RL7 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS13AQ96RL7 AC011266.1-201ENST00000624119 3569 ntBASIC2.97□□□□□ -1.93
VPS13AQ96RL7 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.97□□□□□ -1.93
VPS13AQ96RL7 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS13AQ96RL7 SNORA71.1-201ENST00000364523 117 ntBASIC2.97□□□□□ -1.93
VPS13AQ96RL7 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.97□□□□□ -1.93
VPS13AQ96RL7 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS13AQ96RL7 AL445528.1-201ENST00000426330 420 ntBASIC2.97□□□□□ -1.93
VPS13AQ96RL7 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms