Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC000095.2-202ENST00000637415 154 ntBASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 MIR4302-201ENST00000638058 60 ntBASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 KPNA2P2-201ENST00000419546 1489 ntBASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 NUP58P1-201ENST00000502546 1738 ntBASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 AC005005.4-201ENST00000623789 16698 ntBASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD1Q96NR3 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 LINC02019-201ENST00000608605 2060 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 CKAP2P1-201ENST00000555477 2049 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 RNA5SP242-201ENST00000364171 118 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 RNU6-853P-201ENST00000364306 107 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 Y_RNA.381-201ENST00000365666 102 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC016769.3-201ENST00000396562 315 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 BTBD10P2-201ENST00000404779 676 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 GSTM3P2-201ENST00000412746 530 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 METTL15P3-201ENST00000415522 1221 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 MRPL50P2-201ENST00000416821 482 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC013429.2-201ENST00000418798 781 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 NPM1P24-201ENST00000428039 894 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 USP9YP15-201ENST00000442391 422 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 RPS20P32-201ENST00000456044 356 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC023141.9-201ENST00000458734 412 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 RNU6-1218P-201ENST00000458990 108 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 RN7SL101P-201ENST00000496350 279 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC139783.2-201ENST00000504847 1145 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 HMGN1P13-201ENST00000505795 138 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 FGF7P4-201ENST00000509595 295 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 RNU6-347P-201ENST00000516658 105 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC123904.2-201ENST00000548059 300 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 LSM6P2-201ENST00000552208 177 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AL442663.2-201ENST00000554385 511 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC015917.1-201ENST00000579654 510 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC013553.2-201ENST00000604244 589 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 CU639417.4-201ENST00000623928 207 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 SAMMSON-227ENST00000642114 1199 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 AC004076.2-201ENST00000620532 3323 ntBASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD1Q96NR3 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC068050.1-201ENST00000394891 380 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 RPS4XP8-201ENST00000402039 771 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 Z97832.1-201ENST00000402490 328 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 RN7SKP206-201ENST00000410823 293 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 RN7SKP17-201ENST00000411242 351 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC078974.1-201ENST00000411597 223 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AL133173.1-201ENST00000423458 397 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC019097.1-201ENST00000424783 735 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms