Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 GUCY1B2-204ENST00000531898 1979 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 SNORD113-7-201ENST00000363762 77 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 SNORA43.1-201ENST00000364863 140 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 Y_RNA.539-201ENST00000384635 107 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 TMSB4XP8-201ENST00000402089 135 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 RN7SKP286-201ENST00000410894 299 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 RNU2-71P-201ENST00000411395 189 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC073264.1-201ENST00000411508 416 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 RPSAP35-201ENST00000413753 818 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 TMSB4XP6-201ENST00000415187 135 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 TMSB4XP1-201ENST00000424567 135 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AL353777.1-201ENST00000425552 326 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 BX323845.3-201ENST00000428215 527 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 RPL36AP39-201ENST00000445859 318 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC092865.4-201ENST00000477936 615 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC092824.1-201ENST00000483524 576 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC108120.2-201ENST00000512973 294 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 LECT2-205ENST00000522943 574 ntTSL 3 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 MGST1-215ENST00000540056 546 ntTSL 3 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC027667.1-201ENST00000545814 304 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC090022.1-201ENST00000546569 311 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 HAUS8P1-201ENST00000549005 542 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 HMGB2P1-201ENST00000591146 634 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC010900.2-201ENST00000604508 210 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 RNA5SP440-201ENST00000612665 119 ntBASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC6.4□□□□□ -1.38
NPAS3Q8IXF0 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 AC119674.1-202ENST00000641333 1860 ntBASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 AC092125.1-201ENST00000562568 1995 ntBASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 LINC00561-201ENST00000565815 2738 ntBASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.4□□□□□ -1.39
NPAS3Q8IXF0 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 XPOTP1-201ENST00000443317 2398 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AC023421.1-201ENST00000590535 1785 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 TNPO1P2-201ENST00000426249 2665 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 SNRPEP3-201ENST00000338402 276 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 Y_RNA.20-201ENST00000362479 113 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 Y_RNA.122-201ENST00000363331 96 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 RNU4-48P-201ENST00000365559 182 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 U3.25-201ENST00000391209 220 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 RPS4XP9-201ENST00000405151 780 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AL357752.1-201ENST00000412817 349 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 RPS15AP12-201ENST00000419498 388 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms