Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC008785.1-201ENST00000624475 456 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AP000676.4-201ENST00000624659 623 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 MFSD8-245ENST00000641743 948 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP41Q3LFD5 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP41Q3LFD5 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC011155.1-201ENST00000316512 456 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 RNU6-707P-201ENST00000364647 95 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 SNORA40.2-201ENST00000390847 128 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 RNU11-4P-201ENST00000391149 133 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 RN7SKP202-201ENST00000410439 330 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 RN7SKP167-201ENST00000411047 285 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 RPL7P2-201ENST00000427639 268 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 MTCO1P3-201ENST00000429327 192 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC084290.1-201ENST00000434995 374 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AL356276.2-201ENST00000435919 558 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC098826.2-201ENST00000452011 651 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 SNORA84-201ENST00000459229 133 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 AF213884.1-201ENST00000488102 463 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 DYNLL1P6-201ENST00000503440 264 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC008885.2-201ENST00000509506 930 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC109471.1-201ENST00000511631 612 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 SAP18P1-201ENST00000512058 390 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC112673.1-201ENST00000513168 575 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 MTCO1P49-201ENST00000523429 802 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 PDCD5P1-201ENST00000543528 309 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC004217.3-201ENST00000551552 878 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 MTND4P33-201ENST00000556706 766 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 MIR4666A-201ENST00000580160 79 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AL390816.3-201ENST00000604527 1066 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.48□□□□□ -1.69
USP41Q3LFD5 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.48□□□□□ -1.69
USP41Q3LFD5 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP41Q3LFD5 DCAF13P3-201ENST00000561147 1334 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP41Q3LFD5 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP41Q3LFD5 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 OR11H4-201ENST00000315409 1082 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 NACA3P-201ENST00000359690 648 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 snoZ40.1-201ENST00000364540 72 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 AC019155.1-201ENST00000382242 574 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 RNU6-413P-201ENST00000384115 107 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 MIR23B-201ENST00000384832 97 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 SNORD66.1-201ENST00000391230 76 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 PRELID3BP11-201ENST00000414230 479 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP41Q3LFD5 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP41Q3LFD5 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP41Q3LFD5 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 Z95327.1-201ENST00000446082 482 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 HMGB1P16-201ENST00000447155 540 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
USP41Q3LFD5 AL121877.1-201ENST00000453704 622 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 FGF7P3-201ENST00000454645 303 ntBASIC4.47□□□□□ -1.69
USP41Q3LFD5 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms