Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC4.26□□□□□ -1.73
SOX2P48431 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.26□□□□□ -1.73
SOX2P48431 SNORD95-201ENST00000579879 68 ntBASIC4.26□□□□□ -1.73
SOX2P48431 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.26□□□□□ -1.73
SOX2P48431 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.26□□□□□ -1.73
SOX2P48431 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC4.26□□□□□ -1.73
SOX2P48431 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC4.26□□□□□ -1.73
SOX2P48431 AC107304.1-201ENST00000604229 296 ntBASIC4.26□□□□□ -1.73
SOX2P48431 AL359535.1-201ENST00000612100 1087 ntBASIC4.26□□□□□ -1.73
SOX2P48431 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.26□□□□□ -1.73
SOX2P48431 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.26□□□□□ -1.73
SOX2P48431 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
SOX2P48431 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.25□□□□□ -1.73
SOX2P48431 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SOX2P48431 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SOX2P48431 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
SOX2P48431 SNORA17.1-201ENST00000362945 126 ntBASIC4.25□□□□□ -1.73
SOX2P48431 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SOX2P48431 RNU6-1293P-201ENST00000384077 107 ntBASIC4.25□□□□□ -1.73
SOX2P48431 RNU6-1042P-201ENST00000384204 107 ntBASIC4.25□□□□□ -1.73
SOX2P48431 SNORD96B-201ENST00000386148 79 ntBASIC4.25□□□□□ -1.73
SOX2P48431 RPS24P12-201ENST00000402084 394 ntBASIC4.25□□□□□ -1.73
SOX2P48431 MTCYBP36-201ENST00000404146 440 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AL023807.1-201ENST00000407932 359 ntBASIC4.25□□□□□ -1.73
SOX2P48431 RNA5SP178-201ENST00000410380 128 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AL445487.1-201ENST00000415694 1580 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.25□□□□□ -1.73
SOX2P48431 AL513325.1-201ENST00000417716 1034 ntBASIC4.25□□□□□ -1.73
SOX2P48431 RPL21P32-201ENST00000419877 477 ntBASIC4.25□□□□□ -1.73
SOX2P48431 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.25□□□□□ -1.73
SOX2P48431 RPL7P30-201ENST00000420888 709 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC4.25□□□□□ -1.73
SOX2P48431 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.25□□□□□ -1.73
SOX2P48431 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC4.25□□□□□ -1.73
SOX2P48431 FABP7P1-201ENST00000424004 391 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC234779.1-201ENST00000425910 285 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.25□□□□□ -1.73
SOX2P48431 RPS29P14-201ENST00000431518 171 ntBASIC4.25□□□□□ -1.73
SOX2P48431 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.25□□□□□ -1.73
SOX2P48431 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC4.25□□□□□ -1.73
SOX2P48431 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.25□□□□□ -1.73
SOX2P48431 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC4.25□□□□□ -1.73
SOX2P48431 CEACAMP9-201ENST00000442990 513 ntBASIC4.25□□□□□ -1.73
SOX2P48431 TDGF1P1-201ENST00000445734 527 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.25□□□□□ -1.73
SOX2P48431 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SOX2P48431 AC239367.2-201ENST00000447309 705 ntBASIC4.25□□□□□ -1.73
SOX2P48431 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC4.25□□□□□ -1.73
SOX2P48431 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.25□□□□□ -1.73
SOX2P48431 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.25□□□□□ -1.73
SOX2P48431 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.25□□□□□ -1.73
SOX2P48431 AC091564.1-201ENST00000464563 479 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AP000797.1-201ENST00000478870 387 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC011825.1-201ENST00000484967 388 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.25□□□□□ -1.73
SOX2P48431 AC107401.1-201ENST00000503426 685 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.25□□□□□ -1.73
SOX2P48431 AF213884.2-201ENST00000510417 903 ntBASIC4.25□□□□□ -1.73
SOX2P48431 RNA5SP464-201ENST00000516251 108 ntBASIC4.25□□□□□ -1.73
SOX2P48431 RN7SKP260-201ENST00000516907 149 ntBASIC4.25□□□□□ -1.73
SOX2P48431 Y_RNA.719-201ENST00000517156 106 ntBASIC4.25□□□□□ -1.73
SOX2P48431 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
SOX2P48431 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.25□□□□□ -1.73
SOX2P48431 AC068587.4-201ENST00000533893 186 ntBASIC4.25□□□□□ -1.73
SOX2P48431 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.25□□□□□ -1.73
SOX2P48431 AC090022.1-201ENST00000546569 311 ntBASIC4.25□□□□□ -1.73
SOX2P48431 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.25□□□□□ -1.73
SOX2P48431 CR383656.6-201ENST00000550518 394 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AL049779.2-201ENST00000553847 315 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC091489.2-201ENST00000566263 604 ntBASIC4.25□□□□□ -1.73
SOX2P48431 MTND1P15-201ENST00000579262 949 ntBASIC4.25□□□□□ -1.73
SOX2P48431 SNORA74C-1-201ENST00000580726 201 ntBASIC4.25□□□□□ -1.73
SOX2P48431 MIR548AB-201ENST00000584917 84 ntBASIC4.25□□□□□ -1.73
SOX2P48431 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.25□□□□□ -1.73
SOX2P48431 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.25□□□□□ -1.73
SOX2P48431 FKBP1AP1-201ENST00000594588 318 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC015982.1-201ENST00000608113 465 ntBASIC4.25□□□□□ -1.73
SOX2P48431 SNORD91B-202ENST00000608459 222 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC079395.2-201ENST00000610982 737 ntBASIC4.25□□□□□ -1.73
SOX2P48431 Z99129.1-201ENST00000612510 255 ntBASIC4.25□□□□□ -1.73
SOX2P48431 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.25□□□□□ -1.73
SOX2P48431 RNU6-156P-201ENST00000621869 107 ntBASIC4.25□□□□□ -1.73
SOX2P48431 AC093535.2-201ENST00000624769 2326 ntBASIC4.25□□□□□ -1.73
SOX2P48431 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SOX2P48431 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
SOX2P48431 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SOX2P48431 AC005332.5-201ENST00000591222 2919 ntBASIC4.25□□□□□ -1.73
SOX2P48431 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
SOX2P48431 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.24□□□□□ -1.73
SOX2P48431 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SOX2P48431 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.24□□□□□ -1.73
SOX2P48431 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
SOX2P48431 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SOX2P48431 AC008758.3-201ENST00000507003 1829 ntBASIC4.24□□□□□ -1.73
SOX2P48431 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SOX2P48431 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SOX2P48431 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
SOX2P48431 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SOX2P48431 OR6C69P-201ENST00000394268 893 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms