Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC010655.1-201ENST00000449336 292 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXC4P09017 HGF-207ENST00000453018 721 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC4P09017 HSFY5P-201ENST00000453726 309 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC4P09017 AC015908.1-201ENST00000478739 476 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC4P09017 AC011037.1-201ENST00000483964 558 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC4P09017 RPL7P47-201ENST00000497299 556 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 AC023050.1-201ENST00000498198 304 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC4P09017 AC004069.2-201ENST00000505438 1114 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC4P09017 NDUFB4P9-201ENST00000511646 388 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXC4P09017 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC4P09017 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXC4P09017 AC092747.2-201ENST00000545069 983 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 AC012414.2-201ENST00000559474 187 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXC4P09017 CCDC58P3-201ENST00000590792 430 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXC4P09017 AC011458.1-201ENST00000604034 617 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 Z82195.1-201ENST00000604558 398 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 AC090525.3-201ENST00000605601 189 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 U3.45-201ENST00000607547 219 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXC4P09017 AC243312.2-201ENST00000623340 601 ntBASIC3.6□□□□□ -1.83
HOXC4P09017 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXC4P09017 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXC4P09017 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXC4P09017 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXC4P09017 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXC4P09017 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXC4P09017 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC4P09017 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC4P09017 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC4P09017 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC4P09017 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
HOXC4P09017 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC4P09017 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC4P09017 RNF6P1-201ENST00000444889 1784 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
HOXC4P09017 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC4P09017 SNORD9-201ENST00000362566 104 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
HOXC4P09017 UBE2V1P15-201ENST00000407776 448 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 RPS29P4-201ENST00000414733 161 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXC4P09017 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC4P09017 RPL30P3-201ENST00000424262 333 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC4P09017 ELOCP6-201ENST00000429066 328 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC4P09017 HMGN2P31-201ENST00000432430 273 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 MTCO1P52-201ENST00000433928 531 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXC4P09017 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC4P09017 TPMTP4-201ENST00000450749 678 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 RBMY2UP-201ENST00000453474 324 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC4P09017 ELOCP12-201ENST00000458706 328 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AC034236.1-201ENST00000469891 373 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC4P09017 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC4P09017 AC093770.1-201ENST00000511559 571 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 RNU6-579P-201ENST00000516879 102 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXC4P09017 AC022790.1-201ENST00000522872 204 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AP000926.4-201ENST00000527351 454 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 OR5B10P-201ENST00000532869 642 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC4P09017 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.59□□□□□ -1.83
HOXC4P09017 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC4P09017 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC4P09017 MIR548Y-201ENST00000582739 110 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 NF1P5-201ENST00000588287 448 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AC090330.1-201ENST00000588646 764 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AC098483.2-201ENST00000603158 454 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AC073111.2-201ENST00000605657 1075 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AC015967.1-201ENST00000619893 476 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AL356490.1-201ENST00000623079 479 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AC091905.1-201ENST00000624400 311 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 AC015726.3-201ENST00000624501 418 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC4P09017 AC119674.1-207ENST00000641355 633 ntBASIC3.59□□□□□ -1.83
HOXC4P09017 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC4P09017 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
HOXC4P09017 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC4P09017 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC4P09017 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC4P09017 SAGE2P-201ENST00000420011 2126 ntBASIC3.58□□□□□ -1.84
HOXC4P09017 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
HOXC4P09017 AL365440.1-201ENST00000436135 2167 ntBASIC3.58□□□□□ -1.84
HOXC4P09017 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC4P09017 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC4P09017 MIR218-2-201ENST00000385006 110 ntBASIC3.58□□□□□ -1.84
HOXC4P09017 RPS7P15-201ENST00000415804 584 ntBASIC3.58□□□□□ -1.84
HOXC4P09017 HMGB3P20-201ENST00000417997 600 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms