Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC1.93□□□□□ -2.1
APOBP04114 AL590103.1-201ENST00000434488 307 ntBASIC1.93□□□□□ -2.1
APOBP04114 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC1.93□□□□□ -2.1
APOBP04114 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC1.93□□□□□ -2.1
APOBP04114 RNA5SP154-201ENST00000516193 111 ntBASIC1.93□□□□□ -2.1
APOBP04114 RN7SKP116-201ENST00000516902 319 ntBASIC1.93□□□□□ -2.1
APOBP04114 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC1.93□□□□□ -2.1
APOBP04114 AC020914.4-201ENST00000597690 277 ntBASIC1.93□□□□□ -2.1
APOBP04114 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC1.93□□□□□ -2.1
APOBP04114 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC1.93□□□□□ -2.1
APOBP04114 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 AC027287.1-201ENST00000553115 1453 ntBASIC1.93□□□□□ -2.1
APOBP04114 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC1.93□□□□□ -2.1
APOBP04114 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC1.93□□□□□ -2.1
APOBP04114 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC1.93□□□□□ -2.1
APOBP04114 AC015813.4-201ENST00000610469 179 ntBASIC1.93□□□□□ -2.1
APOBP04114 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
APOBP04114 BCLAF1P1-201ENST00000505813 2752 ntBASIC1.93□□□□□ -2.1
APOBP04114 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC1.93□□□□□ -2.1
APOBP04114 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 AL049780.3-201ENST00000624612 1583 ntBASIC1.93□□□□□ -2.1
APOBP04114 MIR184-201ENST00000384962 84 ntBASIC1.93□□□□□ -2.1
APOBP04114 NPM1P24-201ENST00000428039 894 ntBASIC1.93□□□□□ -2.1
APOBP04114 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC1.93□□□□□ -2.1
APOBP04114 RPS3P1-201ENST00000456781 192 ntBASIC1.93□□□□□ -2.1
APOBP04114 AC022509.4-201ENST00000621404 572 ntBASIC1.93□□□□□ -2.1
APOBP04114 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
APOBP04114 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC1.93□□□□□ -2.1
APOBP04114 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
APOBP04114 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 HMGN2P8-201ENST00000391458 268 ntBASIC1.93□□□□□ -2.1
APOBP04114 RPL21P40-201ENST00000428586 483 ntBASIC1.93□□□□□ -2.1
APOBP04114 MTND2P25-201ENST00000449028 610 ntBASIC1.93□□□□□ -2.1
APOBP04114 RN7SL93P-201ENST00000463035 293 ntBASIC1.93□□□□□ -2.1
APOBP04114 AC026801.2-201ENST00000515352 425 ntBASIC1.93□□□□□ -2.1
APOBP04114 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC1.93□□□□□ -2.1
APOBP04114 AC019227.1-201ENST00000526902 510 ntBASIC1.93□□□□□ -2.1
APOBP04114 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
APOBP04114 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
APOBP04114 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
APOBP04114 CR381670.1-201ENST00000624291 1693 ntBASIC1.92□□□□□ -2.1
APOBP04114 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
APOBP04114 MIR34A-201ENST00000385130 110 ntBASIC1.92□□□□□ -2.1
APOBP04114 ELOCP18-201ENST00000434209 337 ntBASIC1.92□□□□□ -2.1
APOBP04114 AL603825.1-201ENST00000438481 80 ntBASIC1.92□□□□□ -2.1
APOBP04114 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC1.92□□□□□ -2.1
APOBP04114 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC1.92□□□□□ -2.1
APOBP04114 AC025445.1-201ENST00000502728 300 ntBASIC1.92□□□□□ -2.1
APOBP04114 SNORD53-201ENST00000579969 78 ntBASIC1.92□□□□□ -2.1
APOBP04114 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC1.92□□□□□ -2.1
APOBP04114 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC1.92□□□□□ -2.1
APOBP04114 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
APOBP04114 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
APOBP04114 SNORD67-201ENST00000390833 111 ntBASIC1.92□□□□□ -2.1
APOBP04114 HSPE1P16-201ENST00000426640 348 ntBASIC1.92□□□□□ -2.1
APOBP04114 RNA5SP367-201ENST00000516557 118 ntBASIC1.92□□□□□ -2.1
APOBP04114 RNU4ATAC6P-201ENST00000516592 126 ntBASIC1.92□□□□□ -2.1
APOBP04114 AC007954.1-201ENST00000554198 494 ntBASIC1.92□□□□□ -2.1
APOBP04114 AC009097.3-201ENST00000563557 1018 ntBASIC1.92□□□□□ -2.1
APOBP04114 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC1.92□□□□□ -2.1
APOBP04114 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
APOBP04114 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC1.92□□□□□ -2.1
APOBP04114 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC1.92□□□□□ -2.1
APOBP04114 AC008079.2-201ENST00000623543 20396 ntBASIC1.92□□□□□ -2.1
APOBP04114 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC1.92□□□□□ -2.1
APOBP04114 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC1.92□□□□□ -2.1
APOBP04114 SNORA71.1-201ENST00000364523 117 ntBASIC1.92□□□□□ -2.1
APOBP04114 HNRNPDLP1-201ENST00000412834 550 ntBASIC1.92□□□□□ -2.1
APOBP04114 NANOGP6-201ENST00000429190 847 ntBASIC1.92□□□□□ -2.1
APOBP04114 IFNA11P-201ENST00000446352 526 ntBASIC1.92□□□□□ -2.1
APOBP04114 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC1.92□□□□□ -2.1
APOBP04114 RPL5P30-201ENST00000465511 891 ntBASIC1.92□□□□□ -2.1
APOBP04114 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC1.92□□□□□ -2.1
APOBP04114 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC1.92□□□□□ -2.1
APOBP04114 LYZ-203ENST00000549690 669 ntTSL 2 BASIC1.92□□□□□ -2.1
APOBP04114 AC138761.3-201ENST00000579993 334 ntBASIC1.92□□□□□ -2.1
APOBP04114 AL162713.1-201ENST00000604480 262 ntBASIC1.92□□□□□ -2.1
APOBP04114 AC009948.4-201ENST00000604692 675 ntBASIC1.92□□□□□ -2.1
APOBP04114 AL365400.2-201ENST00000605604 902 ntBASIC1.92□□□□□ -2.1
APOBP04114 AC099063.3-201ENST00000642066 185 ntBASIC1.92□□□□□ -2.1
APOBP04114 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC1.92□□□□□ -2.1
APOBP04114 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
APOBP04114 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
APOBP04114 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
APOBP04114 TOMM20P4-201ENST00000427861 435 ntBASIC1.91□□□□□ -2.1
APOBP04114 AC008264.1-201ENST00000447612 367 ntBASIC1.91□□□□□ -2.1
APOBP04114 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC1.91□□□□□ -2.1
APOBP04114 AC107016.2-201ENST00000547968 190 ntBASIC1.91□□□□□ -2.1
APOBP04114 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC1.91□□□□□ -2.1
APOBP04114 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC1.91□□□□□ -2.1
APOBP04114 AC124856.1-201ENST00000600819 896 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms