Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 GUCY1B2-204ENST00000531898 1979 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AL391684.1-202ENST00000641293 1636 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 STAG3L4-201ENST00000352103 530 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 Y_RNA.43-201ENST00000362670 111 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 Y_RNA.105-201ENST00000363182 111 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-44P-201ENST00000384045 107 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-532P-201ENST00000384318 107 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 MIR188-201ENST00000385034 86 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AL139095.3-201ENST00000419672 1203 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AC092967.1-201ENST00000449016 481 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 PPIA-203ENST00000451562 544 ntTSL 2 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AL133351.3-201ENST00000454998 193 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AC112484.3-201ENST00000505910 329 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 MTND5P41-201ENST00000517498 206 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AC011979.2-201ENST00000527568 352 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 GLYATL1P2-202ENST00000588046 902 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AL512782.1-201ENST00000603093 364 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AL355877.2-201ENST00000603670 358 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AL513218.1-201ENST00000606527 391 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 uc_338.31-201ENST00000615595 186 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 AL132640.3-201ENST00000630473 177 ntBASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
TRIM35Q9UPQ4 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 BIN2P1-201ENST00000504996 1530 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 KCNMB3P1-202ENST00000493696 3389 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 RNA5SP110-201ENST00000362638 115 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-1317P-201ENST00000364582 104 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-1151P-201ENST00000384684 107 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 RNA5SP219-201ENST00000390940 113 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 MIR1275-201ENST00000408770 80 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 RPS24P8-201ENST00000431490 402 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 TIMM8BP2-201ENST00000445940 251 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AC104472.2-201ENST00000469035 601 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AC055855.1-201ENST00000489563 579 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 APOBEC3AP1-201ENST00000511396 287 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AP001858.2-201ENST00000536213 601 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AC090651.1-201ENST00000567865 634 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AC092121.1-201ENST00000569452 202 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 MIR4701-201ENST00000583094 63 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 RPSAP75-201ENST00000605848 301 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 MIR6721-201ENST00000617181 87 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms