Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC124303.1-201ENST00000605703 360 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 MIR6861-201ENST00000618657 64 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC127024.6-201ENST00000621598 424 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC068880.5-201ENST00000624331 290 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 MAPK6PS3-201ENST00000403865 2162 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 OR55B1P-203ENST00000641518 2602 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 RAB28P1-201ENST00000411517 641 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC006065.1-201ENST00000422539 802 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 OR2AH1P-201ENST00000425717 928 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 MTCO1P54-201ENST00000430139 712 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC093716.1-201ENST00000435923 377 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 BRK1P2-201ENST00000442875 223 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 FGF7P3-201ENST00000454645 303 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC092754.1-201ENST00000472975 479 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC107398.1-201ENST00000486904 505 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 RN7SL346P-201ENST00000491561 294 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC010486.1-201ENST00000511793 424 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 Y_RNA.693-201ENST00000516641 110 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 SNORA18.6-201ENST00000516792 115 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC137768.1-201ENST00000549998 553 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC037471.2-201ENST00000564941 598 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC015720.2-201ENST00000567709 334 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 MIR4666A-201ENST00000580160 79 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AP001004.1-201ENST00000582468 324 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC008521.2-201ENST00000591021 259 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 BNIP3P8-201ENST00000597863 560 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 FO393422.1-201ENST00000603908 708 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 TAS2R6P-201ENST00000605022 826 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC010200.2-201ENST00000605098 235 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC010680.4-201ENST00000605334 543 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC008250.2-201ENST00000615261 205 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC037198.3-201ENST00000616754 526 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AL132822.1-201ENST00000617063 513 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AC022106.2-201ENST00000620114 757 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 7SK.10-201ENST00000621414 298 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 AL158801.5-201ENST00000623123 465 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 CRYM-AS1-204ENST00000637983 556 ntBASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
CCDC39Q9UFE4 RLIMP2-201ENST00000427891 1563 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 ZNF733P-202ENST00000444809 1573 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC138915.3-201ENST00000562908 1389 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 OR4K12P-201ENST00000406538 961 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AL512422.1-201ENST00000407033 553 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC002069.1-201ENST00000429649 1159 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 YWHAEP1-201ENST00000453697 763 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 HNRNPDLP3-201ENST00000456745 380 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AL591473.1-201ENST00000464297 313 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 RNU6-1225P-201ENST00000516336 65 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 HSPA8P13-201ENST00000523715 472 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC022884.2-201ENST00000578535 580 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC068020.1-201ENST00000594215 661 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 VN1R107P-201ENST00000601784 209 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AP000769.2-201ENST00000602344 396 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC130352.1-201ENST00000602979 661 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms