Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 POLR2KP1-201ENST00000553226 168 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 MIR4480-201ENST00000582492 71 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 ZNF92P3-201ENST00000596594 954 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AC010857.1-201ENST00000606398 594 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AL139089.1-201ENST00000620372 975 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AC024595.1-201ENST00000623088 387 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 CCT5-215ENST00000625723 135 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 ZNF542P-204ENST00000482727 1305 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 ENSAP3-201ENST00000312710 333 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 RNU6-543P-201ENST00000362576 108 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 U3.15-201ENST00000365398 212 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 U1.1-201ENST00000384101 164 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 SNORD65C-201ENST00000390962 71 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AL035419.1-201ENST00000397037 564 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AL391417.1-201ENST00000404100 426 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 HSPE1P12-201ENST00000412576 301 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 USP9YP21-201ENST00000420603 432 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 RPS24P8-201ENST00000431490 402 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 Z80107.1-201ENST00000436830 412 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 ARL5AP2-201ENST00000444698 533 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AL050341.1-201ENST00000447743 313 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 RN7SL330P-201ENST00000469709 307 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC011037.1-201ENST00000483964 558 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 TRBV12-2-201ENST00000489763 344 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC096571.1-202ENST00000506634 735 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC111000.3-201ENST00000508057 576 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 PHBP14-201ENST00000512887 367 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 RNU6-276P-201ENST00000516114 96 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 RN7SKP209-201ENST00000516888 304 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 SUMO2P20-201ENST00000520803 283 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC083923.1-201ENST00000523708 376 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 CYCSP29-201ENST00000533731 318 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC091516.1-201ENST00000549191 703 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AL049838.1-201ENST00000563647 981 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC005255.1-201ENST00000593748 216 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 RPP40P2-201ENST00000603596 712 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC012531.5-201ENST00000611375 151 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC068787.1-201ENST00000623908 691 ntBASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.8□□□□□ -1.8
CCDC28BQ9BUN5 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 IGKV7-3-201ENST00000357453 298 ntBASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 RNA5SP399-201ENST00000364003 117 ntBASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 RNU6-98P-201ENST00000384173 107 ntBASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 MIR550A3-201ENST00000390735 95 ntBASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 RPL7P27-201ENST00000403775 720 ntBASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 RPS16P5-201ENST00000406501 404 ntBASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 AC069213.2-201ENST00000420238 366 ntBASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC28BQ9BUN5 MTCO2P17-201ENST00000424336 677 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms