Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AP000916.1-201ENST00000533869 835 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 BNIP3P5-201ENST00000562290 498 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 AC099676.1-201ENST00000608886 657 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 AC105429.2-201ENST00000610567 517 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VPS35Q96QK1 AF001550.2-201ENST00000636643 217 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS35Q96QK1 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS35Q96QK1 IPO8P1-201ENST00000455509 3109 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS35Q96QK1 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS35Q96QK1 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 UBE3AP2-201ENST00000429033 2259 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VPS35Q96QK1 RN7SKP280-201ENST00000364196 304 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 MIR124-3-201ENST00000384866 87 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS35Q96QK1 PTGES3P2-201ENST00000407942 482 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 RNU2-21P-201ENST00000410368 188 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 MTCO1P43-201ENST00000431831 488 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 RANP8-201ENST00000444720 713 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 AL136097.1-201ENST00000456945 913 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 OR9M1P-201ENST00000459641 921 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC078857.1-201ENST00000469870 667 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 CYCSP20-201ENST00000473154 315 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC008885.2-201ENST00000509506 930 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 NDUFB4P9-201ENST00000511646 388 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC027338.1-201ENST00000514840 825 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 RN7SKP96-201ENST00000516948 297 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 RN7SKP234-201ENST00000517173 224 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC008802.1-201ENST00000519121 791 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VPS35Q96QK1 OR4A12P-201ENST00000530847 918 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 CYCSP30-201ENST00000546447 172 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 MRPS35P3-201ENST00000603189 709 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AL512506.1-201ENST00000613918 449 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC097372.4-201ENST00000625025 466 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC132825.7-201ENST00000638744 335 ntBASIC3.86□□□□□ -1.79
VPS35Q96QK1 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
VPS35Q96QK1 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS35Q96QK1 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS35Q96QK1 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS35Q96QK1 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VPS35Q96QK1 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 ZNF33CP-201ENST00000432492 2030 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS35Q96QK1 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS35Q96QK1 SNORA51.12-201ENST00000384448 134 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 ZNF602P-201ENST00000405929 924 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 SNORA11C-201ENST00000408532 129 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 AC009237.5-201ENST00000414271 501 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 RPL31P45-201ENST00000419532 356 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 HMGB3P5-201ENST00000428894 612 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 ATP5HP2-201ENST00000433885 485 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 RPS26P30-201ENST00000443431 335 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 RPS17P13-201ENST00000448974 407 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 AC233982.1-201ENST00000451247 436 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 CYCSP53-201ENST00000455540 265 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 AC087385.1-201ENST00000475062 312 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 RN7SL132P-201ENST00000478131 296 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 NARSP2-201ENST00000518524 679 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VPS35Q96QK1 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 AC074029.1-201ENST00000552531 1044 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 AC083899.3-201ENST00000603413 594 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 Z82195.1-201ENST00000604558 398 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 AL451086.1-201ENST00000605596 223 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 AC090912.3-201ENST00000609775 533 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 AL359535.1-201ENST00000612100 1087 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 MIR8084-201ENST00000614105 89 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms