Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RPL23AP47-201ENST00000408017 460 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 RNU6-77P-201ENST00000410554 91 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 VN1R42P-201ENST00000424651 344 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 RPEP3-201ENST00000425462 676 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 USP12PY-201ENST00000427677 1064 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 USP9YP31-201ENST00000431405 881 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC011742.1-201ENST00000431448 434 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 MTCO1P43-201ENST00000431831 488 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 RSL24D1P8-201ENST00000434442 492 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 NPM1P13-201ENST00000452663 865 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 RPS24P6-201ENST00000452670 400 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC109327.1-201ENST00000471666 403 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AL024509.2-201ENST00000493462 493 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 KCTD9P2-201ENST00000512203 1013 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 NARSP2-201ENST00000518524 679 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC124293.1-201ENST00000530034 493 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC063950.1-201ENST00000552036 308 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC103881.1-201ENST00000603476 538 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AL163642.2-201ENST00000604722 1019 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AL590392.1-201ENST00000604960 446 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC013468.1-201ENST00000608680 598 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC012409.3-201ENST00000611343 981 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC005962.2-201ENST00000611427 652 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AL121890.3-201ENST00000618494 516 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AL118508.4-201ENST00000624142 1176 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC004925.1-201ENST00000624256 2706 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 RNU6-50P-201ENST00000362356 103 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 RNU1-130P-201ENST00000363930 160 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 RNA5SP175-201ENST00000364275 119 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AL138878.1-201ENST00000405131 347 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 ATF1P1-201ENST00000406040 927 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 MIR1179-201ENST00000408703 91 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC008173.1-201ENST00000418901 264 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 PAICSP7-201ENST00000419829 962 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 CHIAP3-201ENST00000423668 1133 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 HSFY1P1-201ENST00000423928 1178 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 RSL24D1P6-201ENST00000426934 401 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC073508.1-201ENST00000428866 656 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC114973.1-201ENST00000429057 632 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC002542.1-201ENST00000440683 193 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC010618.1-201ENST00000469924 477 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 RPL23AP73-201ENST00000492507 471 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 BNIP3P41-201ENST00000503774 571 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 HMGB3P15-201ENST00000507326 574 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC010468.3-201ENST00000508225 458 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 SETP12-201ENST00000514068 805 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 RNA5SP143-201ENST00000516936 115 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 RN7SKP289-201ENST00000517244 295 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 IGKV2D-36-201ENST00000518643 226 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 OSBPL9P3-201ENST00000534523 595 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AL669831.4-202ENST00000590817 238 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 IPO5P1-202ENST00000600039 287 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AL021997.2-201ENST00000615674 271 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC007546.1-201ENST00000619452 559 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC006213.5-201ENST00000619673 288 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms