Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.04□□□□□ -1.76
BRCA1P38398 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
BRCA1P38398 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
BRCA1P38398 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
BRCA1P38398 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.03□□□□□ -1.76
BRCA1P38398 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
BRCA1P38398 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
BRCA1P38398 GLS-203ENST00000409215 632 ntTSL 4 BASIC4.03□□□□□ -1.76
BRCA1P38398 RNA5SP39-201ENST00000411245 120 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.03□□□□□ -1.76
BRCA1P38398 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.03□□□□□ -1.76
BRCA1P38398 AC140076.1-201ENST00000449897 361 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.03□□□□□ -1.76
BRCA1P38398 S100A11P1-201ENST00000477525 312 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 NPM1P17-201ENST00000479221 602 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 OR9N1P-201ENST00000491296 333 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.03□□□□□ -1.76
BRCA1P38398 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.03□□□□□ -1.76
BRCA1P38398 OR4R3P-201ENST00000525084 838 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.03□□□□□ -1.76
BRCA1P38398 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.03□□□□□ -1.76
BRCA1P38398 EIF5A2P1-201ENST00000564027 460 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 MIR2682-201ENST00000580305 110 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 TUG1_1.1-201ENST00000610654 145 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 AC004241.3-201ENST00000611728 517 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
BRCA1P38398 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
BRCA1P38398 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
BRCA1P38398 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
BRCA1P38398 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
BRCA1P38398 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
BRCA1P38398 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.03□□□□□ -1.76
BRCA1P38398 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.03□□□□□ -1.76
BRCA1P38398 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
BRCA1P38398 RPL5P18-201ENST00000406671 891 ntBASIC4.03□□□□□ -1.77
BRCA1P38398 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.03□□□□□ -1.77
BRCA1P38398 HMGB3P22-202ENST00000451823 572 ntBASIC4.03□□□□□ -1.77
BRCA1P38398 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4.03□□□□□ -1.77
BRCA1P38398 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.03□□□□□ -1.77
BRCA1P38398 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC4.03□□□□□ -1.77
BRCA1P38398 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.03□□□□□ -1.77
BRCA1P38398 AP000926.4-201ENST00000527351 454 ntBASIC4.03□□□□□ -1.77
BRCA1P38398 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.03□□□□□ -1.77
BRCA1P38398 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.03□□□□□ -1.77
BRCA1P38398 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.03□□□□□ -1.77
BRCA1P38398 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC4.03□□□□□ -1.77
BRCA1P38398 AL162574.2-201ENST00000614618 657 ntBASIC4.03□□□□□ -1.77
BRCA1P38398 AC231759.1-201ENST00000616455 597 ntBASIC4.03□□□□□ -1.77
BRCA1P38398 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.03□□□□□ -1.77
BRCA1P38398 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.02□□□□□ -1.77
BRCA1P38398 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
BRCA1P38398 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
BRCA1P38398 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.02□□□□□ -1.77
BRCA1P38398 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
BRCA1P38398 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.02□□□□□ -1.77
BRCA1P38398 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
BRCA1P38398 MTND4P22-201ENST00000413116 1169 ntBASIC4.02□□□□□ -1.77
BRCA1P38398 AL139281.1-201ENST00000422120 335 ntBASIC4.02□□□□□ -1.77
BRCA1P38398 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.02□□□□□ -1.77
BRCA1P38398 AL121578.1-201ENST00000428051 892 ntBASIC4.02□□□□□ -1.77
BRCA1P38398 OR6C72P-201ENST00000451403 892 ntBASIC4.02□□□□□ -1.77
BRCA1P38398 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.02□□□□□ -1.77
BRCA1P38398 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.02□□□□□ -1.77
BRCA1P38398 RPL23AP71-201ENST00000470966 469 ntBASIC4.02□□□□□ -1.77
BRCA1P38398 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.02□□□□□ -1.77
BRCA1P38398 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.02□□□□□ -1.77
BRCA1P38398 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.02□□□□□ -1.77
BRCA1P38398 snoU109.6-201ENST00000516831 118 ntBASIC4.02□□□□□ -1.77
BRCA1P38398 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.02□□□□□ -1.77
BRCA1P38398 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.02□□□□□ -1.77
BRCA1P38398 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.02□□□□□ -1.77
BRCA1P38398 AL592494.3-201ENST00000609485 464 ntBASIC4.02□□□□□ -1.77
BRCA1P38398 AF117829.1-206ENST00000621883 3802 ntBASIC4.02□□□□□ -1.77
BRCA1P38398 AP003485.2-201ENST00000623636 610 ntBASIC4.02□□□□□ -1.77
BRCA1P38398 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
BRCA1P38398 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.02□□□□□ -1.77
BRCA1P38398 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
BRCA1P38398 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
BRCA1P38398 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
BRCA1P38398 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
BRCA1P38398 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
BRCA1P38398 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
BRCA1P38398 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
BRCA1P38398 U3.12-201ENST00000364498 214 ntBASIC4.01□□□□□ -1.77
BRCA1P38398 AC093084.1-201ENST00000424233 687 ntBASIC4.01□□□□□ -1.77
BRCA1P38398 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.01□□□□□ -1.77
BRCA1P38398 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC4.01□□□□□ -1.77
BRCA1P38398 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.01□□□□□ -1.77
BRCA1P38398 AC108734.1-201ENST00000439549 399 ntBASIC4.01□□□□□ -1.77
BRCA1P38398 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.01□□□□□ -1.77
BRCA1P38398 RPS4XP13-201ENST00000483219 789 ntBASIC4.01□□□□□ -1.77
BRCA1P38398 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.01□□□□□ -1.77
BRCA1P38398 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
BRCA1P38398 COX6B1P6-201ENST00000522347 255 ntBASIC4.01□□□□□ -1.77
BRCA1P38398 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC4.01□□□□□ -1.77
BRCA1P38398 SULT1C2P2-201ENST00000562517 294 ntBASIC4.01□□□□□ -1.77
BRCA1P38398 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.01□□□□□ -1.77
BRCA1P38398 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.01□□□□□ -1.77
BRCA1P38398 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms